# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jx2B	315	5.83e-01		c.37.1.8	67404
1f15A	218	8.04e-01	1f15B	b.121.4.5	23320
1mhyD	521	1.60e+00	1mhyD	a.25.1.2	16780
1j7dA	145	3.09e+00	1jatB	d.20.1.1	62680
1clc	639	3.74e+00	1clc	a.102.1.2	18835
				b.1.18.2	21872
1nxjA	183	4.83e+00		c.8.7.1	86382
1hdkA	141	5.36e+00		b.29.1.3	65807
1lcl	142	5.40e+00	1lcl	b.29.1.3	24216
1mtyD	512	8.79e+00	1mhyD	a.25.1.2	16742
1k8wA	327	8.84e+00		b.122.1.1	83094
				unknown_sccs	-10143
1iw7C	1119	9.16e+00		e.29.1.1	71474
1uwwA	191	9.36e+00			
1nar	290	1.02e+01	1nar	c.1.8.5	28988
1bjt	793	1.04e+01	1bjt	e.11.1.1	43249
1p0fA	373	1.14e+01		b.35.1.2	87642
				c.2.1.1	87643
1qysA	106	1.19e+01		unknown_sccs	-13432
1dyoA	160	1.43e+01	1dyoA	b.18.1.7	23771
1heiA	451	1.52e+01	1heiA	c.37.1.14	32463
				c.37.1.14	32464
1m1cA	680	1.63e+01		e.42.1.1	78395
1mdoA	393	1.72e+01		c.67.1.4	79013
1mbyA	88	1.73e+01		d.223.1.1	78931
1bquA	215	1.77e+01	1bquA	b.1.2.1	22066
				b.1.2.1	22067
1a3k	137	2.11e+01	1a3k	b.29.1.3	24218
1p9kA	79	2.12e+01		unknown_sccs	-10238
1i40A	175	2.34e+01		b.40.5.1	66024
1nciA	110	2.46e+01	1edhA	b.1.6.1	22191
1obwA	175	2.47e+01	2prd	b.40.5.1	25416
1bpoA	494	2.52e+01	1bpoA	a.118.1.4	19143
				b.69.6.1	27670
1gx3A	284	2.60e+01		d.3.1.5	70678
1e19A	314	2.73e+01	1b7bA	c.73.1.1	34967
1v84A	253	2.79e+01			
1meoA	209	2.97e+01		c.65.1.1	79035
1gpmA	525	3.15e+01	1gpmA	c.23.16.1	31405
				c.26.2.1	31608
				d.52.2.1	38826
4tsvA	150	3.26e+01	2tnfA	b.22.1.1	23860
1szwA	379	3.30e+01		unknown_sccs	-10164
1tif	78	3.40e+01	1tif	d.15.8.1	37836
1pqnA	127	3.48e+01		c.47.1.8	-7479
1nh1A	330	3.82e+01		unknown_sccs	-11798
1m1lA	236	3.87e+01		unknown_sccs	-11674
1ux6A	350	3.93e+01		unknown_sccs	-3451
				unknown_sccs	-12886