# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rn5A 177 2.98e-01 d.167.1.1 -11591 1nar 290 7.94e-01 1nar c.1.8.5 28988 1bquA 215 8.35e-01 1bquA b.1.2.1 22066 b.1.2.1 22067 1i40A 175 8.59e-01 b.40.5.1 66024 1k8wA 327 1.13e+00 b.122.1.1 83094 unknown_sccs -10143 1mhyD 521 1.25e+00 1mhyD a.25.1.2 16780 1obwA 175 1.37e+00 2prd b.40.5.1 25416 1iw7C 1119 1.42e+00 e.29.1.1 71474 1dkzA 219 1.87e+00 1dkzA unknown_sccs -445 unknown_sccs -3060 1tif 78 2.35e+00 1tif d.15.8.1 37836 1a3k 137 2.49e+00 1a3k b.29.1.3 24218 1r3eA 309 2.57e+00 b.122.1.1 -5118 unknown_sccs -10146 1me8A 503 2.61e+00 c.1.5.1 79028 1hdkA 141 2.72e+00 b.29.1.3 65807 1lcl 142 2.74e+00 1lcl b.29.1.3 24216 3tgl 269 2.77e+00 3tgl c.69.1.17 34733 1nxjA 183 2.86e+00 c.8.7.1 86382 1senA 164 3.30e+00 1oaoC 729 3.53e+00 e.26.1.3 86746 1meoA 209 3.96e+00 c.65.1.1 79035 1rypG 244 4.87e+00 d.153.1.4 41938 1bjt 793 4.96e+00 1bjt e.11.1.1 43249 1giqA 413 5.03e+00 d.166.1.1 76224 d.166.1.1 76225 1qysA 106 5.35e+00 unknown_sccs -13432 1e19A 314 6.10e+00 1b7bA c.73.1.1 34967 1ixmA 192 6.11e+00 1ixmA d.123.1.1 41114 1fs1B 141 6.38e+00 1vcbB a.157.1.1 19252 d.42.1.1 38664 1c1lA 136 6.63e+00 1c1lA b.29.1.3 24219 1vddA 228 7.45e+00 1jx2B 315 7.64e+00 c.37.1.8 67404 1ak5 503 7.70e+00 1ak5 c.1.5.1 28639 1isiA 265 8.09e+00 e.4.1.1 71394 1ep3A 311 8.28e+00 2dorA c.1.4.1 28597 1a49A 530 8.39e+00 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1ux6A 350 8.61e+00 unknown_sccs -3451 unknown_sccs -12886 1nykA 165 8.61e+00 b.33.1.1 86408 1iwmA 186 8.66e+00 b.125.1.2 83758 1g1cA 99 8.70e+00 b.1.1.4 65078 1mbyA 88 9.17e+00 d.223.1.1 78931 1bpoA 494 9.71e+00 1bpoA a.118.1.4 19143 b.69.6.1 27670 1ewnA 219 9.85e+00 1bnkA b.46.1.2 25762 1n5nA 180 9.97e+00 d.167.1.1 85336 1nciA 110 1.01e+01 1edhA b.1.6.1 22191 1dyoA 160 1.03e+01 1dyoA b.18.1.7 23771 1f46A 140 1.07e+01 1f46A d.129.4.1 59643 1ejxC 567 1.20e+01 b.92.1.1 83184 c.1.9.2 83185 1j7dA 145 1.20e+01 1jatB d.20.1.1 62680 1m2dA 110 1.23e+01 c.47.1.11 78476 1bs4A 168 1.28e+01 1bs4A d.167.1.1 42287 1j0hA 588 1.29e+01 b.1.18.2 77027 b.71.1.1 77028 c.1.8.1 77029 1olrA 224 1.30e+01 b.29.1.11 -3489 1m6iA 493 1.30e+01 c.3.1.5 74533 c.3.1.5 74534 d.87.1.1 74535 1f37A 110 1.36e+01 1f37A c.47.1.11 33088 1nrzA 164 1.39e+01 c.38.1.1 86131 1j7nA 776 1.48e+01 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 1m22A 503 1.48e+01 c.117.1.1 78464 1uwwA 191 1.56e+01 1p7tA 731 1.57e+01 c.1.13.1 -5600 1d8cA 723 1.58e+01 1d8cA c.1.13.1 29325 1an9A 340 1.62e+01 1an9A c.4.1.2 30617 d.16.1.3 37904 1k3iA 656 1.67e+01 b.1.18.2 68113 b.18.1.1 68114 b.69.1.1 68115 1jl0A 334 1.71e+01 1jenA d.156.1.1 63155 1mtyD 512 1.76e+01 1mhyD a.25.1.2 16742 1rypA 243 1.79e+01 1pmaA d.153.1.4 41932 1lshA 1056 1.80e+01 a.118.4.1 74242 f.7.1.1 74243 f.7.1.1 74244 1jenA 267 1.86e+01 1jenA 1omp 370 1.88e+01 4mbp c.94.1.1 35778 1th8A 145 1.95e+01 1v84A 253 1.96e+01 1clc 639 2.05e+01 1clc a.102.1.2 18835 b.1.18.2 21872 1ve9A 347 2.05e+01 c.4.1.2 -6056 d.16.1.3 -9214 1a0p 290 2.08e+01 1a0p a.60.9.1 18105 d.163.1.1 42165 1f15A 218 2.09e+01 1f15B b.121.4.5 23320 1wm1A 317 2.14e+01 1m1cA 680 2.19e+01 e.42.1.1 78395 1p9kA 79 2.20e+01 unknown_sccs -10238 1iq8A 582 2.23e+01 b.122.1.1 83074 c.1.20.1 71270 d.17.6.1 83075 1e43A 483 2.23e+01 1bli b.71.1.1 59217 c.1.8.1 59218 1a8p 258 2.34e+01 1fdr b.43.4.2 25654 c.25.1.1 31544 1j9aA 184 2.34e+01 c.55.3.5 84135 2dtr 226 2.37e+01 1bi0 a.4.5.24 16193 a.76.1.1 18399 b.34.1.2 24450 1qwkA 317 2.42e+01 c.1.7.1 -5237 1i4jA 110 2.44e+01 d.55.1.1 76734 1qhlA 227 2.52e+01 1qhlA c.37.1.12 32382 1igwA 434 2.54e+01 c.1.12.7 62370 1oniA 137 2.55e+01 d.79.1.1 87144 1ej6D 418 2.60e+01 i.7.1.1 45970 1p35A 299 2.65e+01 1p35A b.28.1.1 23925 1ksiA 642 2.66e+01 1ksiB b.30.2.1 24408 d.17.2.1 38043 d.17.2.1 38044 1o9yA 84 2.69e+01 unknown_sccs -4105 1t3lA 337 2.70e+01 1i8aA 189 2.78e+01 1i82A b.1.9.2 61951 3daaA 277 2.80e+01 1daaA e.17.1.1 43272 1qy6A 274 2.88e+01 b.47.1.1 -4126 1eybA 471 2.92e+01 1ey2A b.82.1.4 28115 1ntvA 152 2.93e+01 b.55.1.2 86168 1tn3 137 2.94e+01 1htn d.169.1.1 42423 1mh9A 197 2.96e+01 c.108.1.8 79118 1euaA 213 2.98e+01 1fwrA c.1.10.1 29155 1a99A 344 3.04e+01 1pot c.94.1.1 35812 1fi8A 228 3.07e+01 5ptp b.47.1.2 26374 2shpA 525 3.15e+01 2shpA c.45.1.2 32683 d.93.1.1 40533 d.93.1.1 40534 1anf 370 3.16e+01 4mbp c.94.1.1 35776 1kdgA 546 3.22e+01 c.3.1.2 77337 d.16.1.1 77338 1l7lA 121 3.29e+01 b.18.1.16 77790 1ounA 127 3.32e+01 1ounA d.17.4.2 38090 1szwA 379 3.34e+01 unknown_sccs -10164 1g2aA 168 3.36e+01 d.167.1.1 65109 3cms 323 3.37e+01 1smrA b.50.1.2 26865 1mjc 69 3.39e+01 1mjc b.40.4.5 25319 1vjlA 164 3.41e+01 unknown_sccs -11117 1gy6A 127 3.47e+01 d.17.4.2 70736 1ky3A 182 3.47e+01 c.37.1.8 73193 1r12A 258 3.49e+01 e.4.1.1 -11807 1sr4C 166 3.52e+01 1ha3A 405 3.57e+01 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 3mag 307 3.62e+01 3mag c.66.1.25 34205 1lucB 324 3.62e+01 1lucA c.1.16.1 29548 1kv7A 488 3.64e+01 b.6.1.3 68873 b.6.1.3 68874 b.6.1.3 68875 1aa8A 347 3.74e+01 1an9A 1hfuA 503 3.85e+01 b.6.1.3 65827 b.6.1.3 65828 b.6.1.3 65829 1g6oA 330 3.98e+01 1g6oA c.37.1.11 32430 1jeyA 609 3.98e+01 1jeqA unknown_sccs -4426 unknown_sccs -7990