# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1fyxA	149	1.16e+00	1fyvA	c.23.2.1	31128
1b8aA	438	1.69e+00	1b8aA	b.40.4.1	25244
				d.104.1.1	40765
1h2kA	349	4.61e+00		b.82.2.6	76572
1mnaA	298	5.34e+00		c.69.1.22	79322
1mk4A	157	5.43e+00		d.108.1.1	84979
2bbvA	363	5.66e+00	2bbvA	b.121.4.4	23323
2gdm	153	6.95e+00	2gdm	a.1.1.2	15212
1hulA	108	7.22e+00	1hulA	a.26.1.2	16865
1ki1B	352	7.45e+00		a.87.1.1	72497
				b.55.1.1	72498
1g8pA	350	8.12e+00	1g8pA	c.37.1.20	60376
1ofcX	304	8.14e+00		a.4.1.3	-195
				unknown_sccs	-199
				unknown_sccs	-978
1l4iA	206	9.06e+00		b.1.11.1	73564
				b.7.2.1	73565
1mnnA	340	9.28e+00		b.2.5.7	79324
1j8rA	196	9.78e+00	1j8rA	b.2.3.3	62745
1kyqA	274	1.01e+01		c.2.1.11	73281
				e.37.1.1	73282
1mf7A	194	1.09e+01		c.62.1.1	84937
1isiA	265	1.20e+01		e.4.1.1	71394
1sluA	142	1.48e+01	1sluA	b.16.1.1	23685
7ahlA	293	1.50e+01	7ahlA	f.6.1.1	43812
1f15A	218	1.56e+01	1f15B	b.121.4.5	23320
1cewI	108	1.78e+01	1cewI	d.17.1.2	37999
1lqtA	456	1.80e+01		c.3.1.1	74198
				c.4.1.1	74199
1n3yA	198	1.82e+01		c.62.1.1	79976
1skoA	143	1.83e+01			
1m1cA	680	1.92e+01		e.42.1.1	78395
1bebA	162	1.93e+01	1bebA	b.60.1.1	27115
1i52A	236	2.01e+01	1i52A	c.68.1.13	61767
1dyoA	160	2.33e+01	1dyoA	b.18.1.7	23771
1na6A	404	2.39e+01		unknown_sccs	-4715
				unknown_sccs	-7564
1k30A	368	2.45e+01		c.112.1.1	68067
1c8zA	265	2.45e+01	1c8zA	d.23.1.1	38375
1p4uA	153	2.59e+01		b.1.10.2	87780
1vypX	364	2.61e+01			
1ido	192	2.72e+01	1ido	c.62.1.1	34139
1q77A	138	2.76e+01		c.26.2.4	-6639
1miwA	404	2.82e+01		a.173.1.1	79162
				d.218.1.4	79163
1gvoA	364	2.90e+01		c.1.4.1	76357
1r0kA	388	2.90e+01			
1iuqA	367	2.93e+01		c.112.1.1	-8440
1tif	78	3.24e+01	1tif	d.15.8.1	37836
1vyrA	364	3.41e+01			
1ceo	343	3.46e+01	1ceo	c.1.8.3	28808
1qqhA	144	3.50e+01	1dtoA	b.91.1.1	28404
1dkzA	219	3.64e+01	1dkzA	unknown_sccs	-445
				unknown_sccs	-3060
1avaC	181	3.70e+01	1avaC	b.42.4.1	25604
1utcA	363	3.77e+01		a.118.1.4	-1568
				b.69.6.1	-4612
1gl4B	98	3.88e+01		b.1.1.4	65288
1f1zA	273	3.97e+01	1f1zA	a.4.5.27	16081
				c.52.1.16	33334