PFRMAT RR
TARGET T0272
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
MWLTKLVLNPASRAARRDLANPYEMHRTLSKAVSRALEEGRERLLWRLEP
ARGLEPPVVLVQTLTEPDWSVLDEGYAQVFPPKPFHPALKPGQRLRFRLR
ANPAKRLAATGKRVALKTPAEKVAWLERRLEEGGFRLLEGERGPWVQILQ
DTFLEVRRKKDGEEAGKLLQVQAVLFEGRLEVVDPERALATLRRGVGPGK
ALGLGLLSVAP
29 95 0 8 0.43945
59 99 0 8 0.30685
182 206 0 8 0.27965
99 192 0 8 0.255
33 63 0 8 0.2533
77 171 0 8 0.25075
76 171 0 8 0.238
61 176 0 8 0.2363
44 209 0 8 0.2363
104 202 0 8 0.2108
82 137 0 8 0.19975
59 77 0 8 0.1972
51 168 0 8 0.1955
58 168 0 8 0.187
36 168 0 8 0.187
156 206 0 8 0.1836
69 114 0 8 0.1836
66 76 0 8 0.1836
END