# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jc4A 148 1.57e+00 1jc4A d.32.1.4 62863 1qvjA 292 2.34e+00 d.113.1.1 -10902 1q33A 292 2.54e+00 d.113.1.1 -10901 2bbvA 363 2.98e+00 2bbvA b.121.4.4 23323 1vom 762 3.22e+00 1lvk b.34.3.1 24577 c.37.1.9 32174 1ten 90 4.12e+00 1ten b.1.2.1 21990 2bbvC 363 4.52e+00 2bbvA b.121.4.4 23325 1mm4A 170 5.61e+00 f.4.1.2 79294 1lrzA 426 5.99e+00 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1g8iA 190 6.54e+00 1rec a.39.1.5 60363 1bh5A 183 6.71e+00 1qipA d.32.1.1 38476 1uv7A 110 7.94e+00 unknown_sccs -10256 1trrA 107 8.18e+00 1jhgA a.4.12.1 19017 1qipA 183 9.27e+00 1qipA d.32.1.1 38470 1rfzA 168 9.34e+00 unknown_sccs -1206 1esc 306 1.04e+01 1esc c.23.10.1 31334 1o6uA 403 1.11e+01 a.5.3.1 -366 unknown_sccs -3048 c.13.1.1 -6221 2wrpR 107 1.13e+01 1jhgA a.4.12.1 19010 1mnd 762 1.43e+01 1lvk b.34.3.1 24591 c.37.1.9 32188 1j2mA 99 1.44e+01 a.165.1.1 84018 1mszA 86 1.47e+01 d.68.7.1 79428 1nzjA 298 1.52e+01 c.26.1.1 -6600 1bct 69 1.53e+01 1bct j.35.1.1 46237 1bawA 105 1.58e+01 1plc b.6.1.1 22868 1gl4B 98 1.63e+01 b.1.1.4 65288 1pmnA 364 1.81e+01 d.144.1.7 -11297 1tikA 213 1.83e+01 1dy2A 180 2.04e+01 1koe d.169.1.5 42451 1od5A 492 2.06e+01 b.82.1.2 86832 b.82.1.2 86833 1hdmA 201 2.12e+01 1iakA b.1.1.2 21583 d.19.1.1 38157 1itkA 731 2.27e+01 a.93.1.3 71417 a.93.1.3 71418 1ii6A 368 2.29e+01 1bg2 c.37.1.9 62413 1rcsA 105 2.40e+01 1jhgA a.4.12.1 19025 1udsA 255 2.54e+01 d.14.1.4 -9055 d.101.1.1 -10745 1gdgA 293 2.58e+01 1iufA 144 2.61e+01 a.4.1.7 71439 a.4.1.7 71440 1h0aA 158 2.82e+01 a.118.9.1 76434 1qq2A 199 2.84e+01 1qq2A c.47.1.10 33064 1h95A 79 2.84e+01 b.40.4.5 65742 1bhb 71 2.88e+01 1c3wA j.35.1.1 46239 1bxiB 134 2.89e+01 1bxiB d.4.1.1 37136 1u2fA 90 2.95e+01 1u2fA d.58.7.1 39168 1fxxA 482 2.96e+01 1fxxA c.55.3.5 33726 1jxcA 68 2.99e+01 g.3.7.5 77201 1emvB 134 3.06e+01 1bxiB d.4.1.1 37135 1fr2B 134 3.15e+01 d.4.1.1 83257 1top 162 3.25e+01 1ncx a.39.1.5 17223 1eyhA 144 3.25e+01 1eduA a.118.9.1 19214 1ncx 162 3.32e+01 1ncx a.39.1.5 17222 1mntA 76 3.60e+01 1bazA a.43.1.1 17453 1ggzA 148 3.62e+01 a.39.1.5 70176 1eduA 149 3.62e+01 1eduA a.118.9.1 19215 1em9A 154 3.79e+01 1d1dA a.73.1.1 18333 1d9cA 121 3.80e+01 1d9cA a.26.1.3 16901 1pcs 98 3.85e+01 1plc b.6.1.1 22871 1p9sA 300 3.92e+01 b.47.1.4 87999