a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0272 1wj9, Thermus thermophilus
- gi|23105453|ref|ZP_00091909.1|_113:204 hypothetical protein [Azotobacter vinelandii]

                 10        20        30        40        50        60  
                 |         |         |         |         |         |  
   1 ...ATGKRVALKTPAEKVAWLERRLEEGGFRLLEGERGPWVQILQDTFLEVRRKKDGEEAGKLLQ
   2 tvtRAGKRRGLLGEAEQLAWLQRQGERHGFAV------KAVLVSASDLLDSRRK--G---GAPIV


            70        80        90       100     
            |         |         |         |     
   1 VQAVLFEGRLEVVDPERALATLRRGVGPGKALGLGLLSVAP..
   2 LQRVCFEGLLQVVEADALRRALASGIGPAKAFGCGLLSVARc.