# List of top-scoring protein chains for T0272.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ii7A 333 1.16e+00 1ii7A d.159.1.4 62415 1quqB 121 2.99e+00 1quqB b.40.4.3 25305 1uj2A 252 3.70e+00 c.37.1.6 -7061 1mvoA 136 4.34e+00 c.23.1.1 79513 1n9wA 422 6.40e+00 b.40.4.1 85473 d.104.1.1 85474 1lurA 339 6.66e+00 b.30.5.4 84717 1ax4A 467 8.04e+00 1ax4A c.67.1.2 34391 1fcdC 174 9.49e+00 1fcdC a.3.1.4 15966 a.3.1.4 15967 1u2fA 90 1.04e+01 1u2fA d.58.7.1 39168 1nx8A 273 1.05e+01 b.82.2.8 86374 1vj3A 205 1.53e+01 c.71.1.1 -8370 1dyr 206 1.53e+01 1aoeA c.71.1.1 34916 2pcbB 104 1.54e+01 1ycc a.3.1.1 15869 1jfrA 262 1.56e+01 1jfrA c.69.1.16 34724 1q9uA 130 1.59e+01 unknown_sccs -11025 1wejF 105 1.61e+01 1ycc a.3.1.1 15865 1vazA 88 1.61e+01 unknown_sccs -9419 1q33A 292 1.68e+01 d.113.1.1 -10901 1lwjA 441 1.78e+01 b.71.1.1 74303 c.1.8.1 74304 1gl2D 65 1.91e+01 h.1.15.1 65281 1q92A 197 1.92e+01 c.108.1.8 -6819 1g10A 102 1.95e+01 1g10A d.137.1.1 60191 1ugsA 203 2.17e+01 1ugrA 203 2.19e+01 1ugpA 203 2.19e+01 1ireA 204 2.20e+01 d.149.1.1 76769 1ayfA 105 2.22e+01 1ayfA d.15.4.1 37684 1ps0A 360 2.24e+01 1hzmA 154 2.31e+01 c.46.1.1 65975 1uepA 103 2.34e+01 b.36.1.1 -3750 1ihbA 162 2.40e+01 1bd8 d.211.1.1 19161 2lfb 100 2.44e+01 1lfb a.4.1.1 15990 1lfb 99 2.44e+01 1lfb a.4.1.1 15989 1pfjA 108 2.47e+01 1hqi 90 2.47e+01 1hqi d.137.1.1 41454 1e6eB 128 2.49e+01 1ayfA d.15.4.1 59300 1g3nB 168 2.50e+01 1bd8 d.211.1.1 19163 1l6uA 128 2.51e+01 d.15.4.1 73630 1cjeA 127 2.51e+01 1ayfA d.15.4.1 37686 1eybA 471 2.53e+01 1ey2A b.82.1.4 28115 1ul3A 112 2.58e+01 d.58.5.1 -9972 1ic8A 194 2.60e+01 a.4.1.1 76740 a.35.1.1 76741 9pap 212 2.64e+01 1cs8A d.3.1.1 37006 1pdr 99 2.70e+01 1pdr b.36.1.1 24771 1ocxA 182 2.86e+01 b.81.1.3 86814 1meg 216 2.90e+01 1cs8A d.3.1.1 37021 1earA 147 2.99e+01 b.107.1.1 64875 d.58.38.1 64876 1t0hB 224 3.03e+01 1qydA 313 3.08e+01 c.2.1.2 -5786 1j3kC 328 3.08e+01 d.117.1.1 84072 1l1fA 505 3.18e+01 c.2.1.7 73456 c.58.1.1 73457 1ppo 216 3.24e+01 1cs8A d.3.1.1 37020 1o0eA 208 3.25e+01 d.3.1.1 -8871 1h2vZ 156 3.29e+01 d.58.7.1 76595 1indH 226 3.32e+01 1igtB b.1.1.1 19839 b.1.1.2 20943 1c7gA 456 3.37e+01 c.67.1.2 -8153 1pwaA 162 3.41e+01 b.42.1.1 -4009 1e6yC 247 3.43e+01 1mroC d.58.31.1 39441 1ehaA 558 3.52e+01 1ehaA b.1.18.2 21859 b.71.1.1 27786 c.1.8.1 28773 1eh9A 558 3.55e+01 1ehaA b.1.18.2 21858 b.71.1.1 27785 c.1.8.1 28772 2mobA 138 3.62e+01 1ckv d.137.1.1 41453 1h1rB 258 3.76e+01 a.74.1.1 76490 a.74.1.1 76491 1mx6A 168 3.79e+01 d.211.1.1 79642 1qmzB 259 3.79e+01 1vin a.74.1.1 18338 a.74.1.1 18339 1e9hB 261 3.80e+01 a.74.1.1 64813 a.74.1.1 64814 1jsuB 260 3.82e+01 1vin a.74.1.1 18336 a.74.1.1 18337 1oiuB 260 3.83e+01 1vjfA 180 3.88e+01 d.116.1.1 -10941 1c9oA 66 3.96e+01 1mjc b.40.4.5 25325 1hzbA 66 3.97e+01 b.40.4.5 65965 1hzaA 67 3.97e+01 b.40.4.5 65963