# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q9uA 130 1.21e-03 unknown_sccs -11025 1lfpA 249 3.49e-01 e.39.1.1 73885 1vjqA 79 4.82e-01 unknown_sccs -13478 1j3mA 129 5.59e-01 1mo9A 523 1.87e+00 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1fu1A 203 3.40e+00 1fu1B b.59.1.1 27076 h.1.11.1 45630 1jj2L 194 3.89e+00 1ffkI d.12.1.2 63097 1c7gA 456 4.71e+00 c.67.1.2 -8153 1kdgA 546 5.52e+00 c.3.1.2 77337 d.16.1.1 77338 1c9oA 66 6.59e+00 1mjc b.40.4.5 25325 1l6rA 227 7.25e+00 c.108.1.10 77768 1qhlA 227 7.52e+00 1qhlA c.37.1.12 32382 1edzA 320 7.55e+00 1ee9A c.2.1.7 30287 c.58.1.2 33935 1ax4A 467 8.64e+00 1ax4A c.67.1.2 34391 1qtoA 122 9.41e+00 1bylA d.32.1.2 38494 1a99A 344 1.01e+01 1pot c.94.1.1 35812 1tn3 137 1.18e+01 1htn d.169.1.1 42423 1ic8A 194 1.18e+01 a.4.1.1 76740 a.35.1.1 76741 1thx 115 1.25e+01 1thx c.47.1.1 32732 1sv6A 269 1.41e+01 1uf6A 178 1.42e+01 unknown_sccs -4533 1jflA 228 1.44e+01 c.78.2.1 71656 c.78.2.1 71657 1nar 290 1.48e+01 1nar c.1.8.5 28988 1l9vA 317 1.57e+01 d.13.2.1 73760 d.216.1.1 73761 1ugpA 203 1.61e+01 1pmi 440 1.62e+01 1pmi b.82.1.3 28114 1lst 239 1.64e+01 1lst c.94.1.1 35755 1m1zA 513 1.66e+01 c.26.2.1 78457 d.153.1.1 78458 1sbxA 106 1.70e+01 1ireA 204 1.71e+01 d.149.1.1 76769 1t1vA 93 1.73e+01 1v33A 366 1.76e+01 unknown_sccs -11384 1ok7A 366 1.78e+01 1nxiA 132 1.80e+01 d.58.47.1 86381 1s72H 171 1.89e+01 1mjhA 162 2.04e+01 1mjhA c.26.2.4 31639 1r26A 125 2.13e+01 c.47.1.1 -7389 1ab4 477 2.17e+01 1ab4 e.11.1.1 43251 1j0fA 100 2.26e+01 unknown_sccs -7483 1oxkB 134 2.30e+01 c.23.1.1 -6411 1ois 223 2.30e+01 1a36A e.15.1.1 43267 1v3vA 333 2.37e+01 1g7sA 594 2.49e+01 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1mmiA 366 2.50e+01 d.131.1.1 -11093 d.131.1.1 -11094 d.131.1.1 -11095 1tp6A 128 2.54e+01 1aerA 205 2.55e+01 1aerA d.166.1.1 42249 1kfwA 435 2.56e+01 c.1.8.5 77376 d.26.3.1 77377 1ufkA 254 2.59e+01 unknown_sccs -8103 2polA 366 2.62e+01 2polA d.131.1.1 41356 d.131.1.1 41357 d.131.1.1 41358 1lfb 99 2.62e+01 1lfb a.4.1.1 15989 1viuA 203 2.63e+01 d.113.1.1 -10889 1t8hA 277 2.70e+01 1h80A 464 2.75e+01 b.80.1.8 65714 1jg8A 347 2.80e+01 1jg8A c.67.1.1 62946 1m6sA 347 2.80e+01 c.67.1.1 78701 1ygs 234 3.02e+01 1ygs b.26.1.1 23907 1ihoA 283 3.14e+01 1ihoA c.26.1.4 62390 1npk 154 3.37e+01 1npk d.58.6.1 39099 1bmv1 198 3.41e+01 1bmv1 1epaA 164 3.51e+01 1epaA b.60.1.1 27128 1pb1A 416 3.70e+01 c.77.1.1 88014 1qhtA 775 3.84e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1ogwA 76 3.86e+01 d.15.1.1 87001 1ubi 76 3.87e+01 1ubi d.15.1.1 37584 1eiwA 111 3.96e+01 1eiwA c.23.3.1 31130