# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1ii7A	333	5.98e-01	1ii7A	d.159.1.4	62415
1uj2A	252	4.90e+00		c.37.1.6	-7061
1ukz	203	4.98e+00	1zin	c.37.1.1	31840
1q9uA	130	5.18e+00		unknown_sccs	-11025
1qydA	313	7.01e+00		c.2.1.2	-5786
1vjfA	180	9.42e+00		d.116.1.1	-10941
1fjgP	88	9.72e+00	1emwA	d.27.1.1	38444
1mvoA	136	1.06e+01		c.23.1.1	79513
1quqB	121	1.21e+01	1quqB	b.40.4.3	25305
1ofcX	304	1.32e+01		a.4.1.3	-195
				unknown_sccs	-199
				unknown_sccs	-978
1vjqA	79	1.37e+01		unknown_sccs	-13478
1igqA	62	1.37e+01		b.34.1.3	66130
1l6rA	227	1.62e+01		c.108.1.10	77768
1pwaA	162	1.81e+01		b.42.1.1	-4009
1c9oA	66	1.96e+01	1mjc	b.40.4.5	25325
2shpA	525	1.99e+01	2shpA	c.45.1.2	32683
				d.93.1.1	40533
				d.93.1.1	40534
1bazA	53	2.42e+01	1bazA	a.43.1.1	17421
1be9A	119	2.54e+01	1pdr	b.36.1.1	24774
1eqcA	394	2.57e+01	1cz1A	c.1.8.3	28811
1tn3	137	2.73e+01	1htn	d.169.1.1	42423
1i6lA	328	2.83e+01		c.26.1.1	66041
1nk4A	580	2.98e+01		c.55.3.5	-7625
				e.8.1.1	-11875
1l6oA	95	3.10e+01		b.36.1.1	84534
1j6qA	136	3.15e+01		b.40.9.1	77091
1gl2D	65	3.27e+01		h.1.15.1	65281
1xwl	580	3.30e+01	1xwl	c.55.3.5	33708
				e.8.1.1	43001
1af7	274	3.35e+01	1af7	a.58.1.1	17928
				c.66.1.8	34203
1lylA	504	3.35e+01	1lylA	b.40.4.1	25261
				d.104.1.1	40717
1d2rA	326	3.39e+01	1d2rB	c.26.1.1	31572
1p1mA	406	3.39e+01		b.92.1.4	87696
				c.1.9.9	87697
1e1oA	504	3.47e+01	1lylA	b.40.4.1	25258
				d.104.1.1	40714
1bvqA	141	3.60e+01	1bvqA	d.38.1.1	38542
1j6pA	418	3.74e+01		b.92.1.4	77089
				c.1.9.9	77090
1jpyA	137	3.76e+01		g.17.1.6	67065
1lo7A	141	3.84e+01		d.38.1.1	74144