# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1q9uA	130	1.27e-02		unknown_sccs	-11025
1kdgA	546	7.77e-01		c.3.1.2	77337
				d.16.1.1	77338
1vjqA	79	1.57e+00		unknown_sccs	-13478
1qtoA	122	1.91e+00	1bylA	d.32.1.2	38494
1lfpA	249	2.18e+00		e.39.1.1	73885
1c7gA	456	2.62e+00		c.67.1.2	-8153
1sv6A	269	3.93e+00			
1mo9A	523	4.36e+00		c.3.1.5	79341
				c.3.1.5	79342
				d.87.1.1	79343
1qhlA	227	5.34e+00	1qhlA	c.37.1.12	32382
1ufkA	254	6.33e+00		unknown_sccs	-8103
1mvoA	136	6.91e+00		c.23.1.1	79513
1j3mA	129	7.30e+00			
1fjgP	88	8.44e+00	1emwA	d.27.1.1	38444
1ax4A	467	9.32e+00	1ax4A	c.67.1.2	34391
1jyoA	130	9.50e+00		d.198.1.1	67483
1l6rA	227	1.00e+01		c.108.1.10	77768
1e19A	314	1.07e+01	1b7bA	c.73.1.1	34967
1uj2A	252	1.25e+01		c.37.1.6	-7061
1ecsA	126	1.26e+01	1ecsA	d.32.1.2	59407
1jpyA	137	1.39e+01		g.17.1.6	67065
1j6qA	136	1.59e+01		b.40.9.1	77091
1ds1A	324	1.68e+01	1drtA	b.82.2.2	28127
1c9oA	66	1.70e+01	1mjc	b.40.4.5	25325
1ii7A	333	1.80e+01	1ii7A	d.159.1.4	62415
1uf6A	178	1.83e+01		unknown_sccs	-4533
1lurA	339	1.90e+01		b.30.5.4	84717
1nxiA	132	1.92e+01		d.58.47.1	86381
1p3wA	404	1.94e+01		c.67.1.3	87752
1tu1A	148	2.15e+01			
1cleA	534	2.18e+01	1thg	c.69.1.17	34771
1m6iA	493	2.18e+01		c.3.1.5	74533
				c.3.1.5	74534
				d.87.1.1	74535
1j5xA	342	2.18e+01		c.80.1.1	71591
1t8hA	277	2.22e+01			
1llfA	534	2.24e+01		c.69.1.17	78094
1ugmA	125	2.33e+01			
1ihoA	283	2.37e+01	1ihoA	c.26.1.4	62390
1nar	290	2.37e+01	1nar	c.1.8.5	28988
1ci3M	249	2.39e+01	1hcz	b.2.6.1	22480
				b.84.2.2	28266
1q92A	197	2.41e+01		c.108.1.8	-6819
1edzA	320	2.56e+01	1ee9A	c.2.1.7	30287
				c.58.1.2	33935
1m1zA	513	2.71e+01		c.26.2.1	78457
				d.153.1.1	78458
1tn3	137	2.73e+01	1htn	d.169.1.1	42423
1mjhA	162	2.83e+01	1mjhA	c.26.2.4	31639
1l9vA	317	2.98e+01		d.13.2.1	73760
				d.216.1.1	73761
1v6fA	151	3.00e+01			
1aerA	205	3.01e+01	1aerA	d.166.1.1	42249
1s72H	171	3.04e+01			
1v7oA	165	3.16e+01		unknown_sccs	-10249
1jfyA	311	3.17e+01			
1jr7A	311	3.17e+01		b.82.2.3	63255
1jfrA	262	3.20e+01	1jfrA	c.69.1.16	34724
1u2fA	90	3.70e+01	1u2fA	d.58.7.1	39168
1pp7U	131	3.88e+01		unknown_sccs	-304