# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q9uA 130 3.36e-02 unknown_sccs -11025 1qtoA 122 1.70e-01 1bylA d.32.1.2 38494 1kdgA 546 1.83e-01 c.3.1.2 77337 d.16.1.1 77338 1lfpA 249 7.95e-01 e.39.1.1 73885 1ecsA 126 1.59e+00 1ecsA d.32.1.2 59407 1vjqA 79 2.12e+00 unknown_sccs -13478 1mvoA 136 2.52e+00 c.23.1.1 79513 1c7gA 456 3.49e+00 c.67.1.2 -8153 1sv6A 269 3.67e+00 1jpyA 137 4.15e+00 g.17.1.6 67065 1lurA 339 4.63e+00 b.30.5.4 84717 1j3mA 129 5.57e+00 1ax4A 467 6.02e+00 1ax4A c.67.1.2 34391 1uf6A 178 6.21e+00 unknown_sccs -4533 1lfb 99 6.69e+00 1lfb a.4.1.1 15989 1mo9A 523 6.80e+00 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1qhlA 227 6.88e+00 1qhlA c.37.1.12 32382 1j6qA 136 7.06e+00 b.40.9.1 77091 1fjgP 88 7.80e+00 1emwA d.27.1.1 38444 1ds1A 324 8.84e+00 1drtA b.82.2.2 28127 1qh8B 519 9.42e+00 1qguB c.92.2.3 35634 1v7oA 165 9.74e+00 unknown_sccs -10249 1ah6 220 1.10e+01 1yer d.122.1.1 41094 1jyoA 130 1.12e+01 d.198.1.1 67483 1l6rA 227 1.17e+01 c.108.1.10 77768 1l9vA 317 1.17e+01 d.13.2.1 73760 d.216.1.1 73761 1c9oA 66 1.43e+01 1mjc b.40.4.5 25325 1ihoA 283 1.54e+01 1ihoA c.26.1.4 62390 1e8cA 498 1.56e+01 c.98.1.1 59377 c.59.1.1 59378 c.72.2.1 59379 1j5xA 342 1.61e+01 c.80.1.1 71591 1a99A 344 1.63e+01 1pot c.94.1.1 35812 1mjhA 162 1.68e+01 1mjhA c.26.2.4 31639 1ajsA 412 1.72e+01 1ajsA c.67.1.1 34276 1a3k 137 1.81e+01 1a3k b.29.1.3 24218 1gefA 123 1.81e+01 1gefA c.52.1.18 60465 1i3zA 103 1.82e+01 d.93.1.1 83667 1m1zA 513 1.94e+01 c.26.2.1 78457 d.153.1.1 78458 4fgf 146 1.98e+01 1bfg b.42.1.1 25486 1q92A 197 1.98e+01 c.108.1.8 -6819 1mh9A 197 2.05e+01 c.108.1.8 79118 1jfrA 262 2.06e+01 1jfrA c.69.1.16 34724 1nxiA 132 2.19e+01 d.58.47.1 86381 1m6iA 493 2.21e+01 c.3.1.5 74533 c.3.1.5 74534 d.87.1.1 74535 1u2fA 90 2.26e+01 1u2fA d.58.7.1 39168 1ci3M 249 2.29e+01 1hcz b.2.6.1 22480 b.84.2.2 28266 1flcA 432 2.30e+01 1flcA b.19.1.3 23837 c.23.10.2 31337 1pp7U 131 2.34e+01 unknown_sccs -304 1gox 370 2.35e+01 1gox c.1.4.1 28607 1e19A 314 2.35e+01 1b7bA c.73.1.1 34967 1ygs 234 2.44e+01 1ygs b.26.1.1 23907 1ii7A 333 2.49e+01 1ii7A d.159.1.4 62415 1g7sA 594 2.50e+01 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1edzA 320 2.61e+01 1ee9A c.2.1.7 30287 c.58.1.2 33935 1ve9A 347 2.78e+01 c.4.1.2 -6056 d.16.1.3 -9214 1lktA 104 2.88e+01 1lktA b.90.1.1 28398 1m1nB 522 2.95e+01 c.92.2.3 78418 1s72H 171 2.96e+01 1aerA 205 3.02e+01 1aerA d.166.1.1 42249 1jfyA 311 3.07e+01 1jr7A 311 3.07e+01 b.82.2.3 63255 1g1cA 99 3.07e+01 b.1.1.4 65078 1tiqA 180 3.12e+01 1sur 215 3.13e+01 1sur c.26.2.2 31620 1cleA 534 3.19e+01 1thg c.69.1.17 34771 1llfA 534 3.24e+01 c.69.1.17 78094 1ufkA 254 3.28e+01 unknown_sccs -8103 1uocA 289 3.55e+01 unknown_sccs -7671 2shpA 525 3.56e+01 2shpA c.45.1.2 32683 d.93.1.1 40533 d.93.1.1 40534 1mjc 69 3.56e+01 1mjc b.40.4.5 25319 1pwaA 162 3.68e+01 b.42.1.1 -4009 1quqB 121 3.95e+01 1quqB b.40.4.3 25305