# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1q9uA	130	1.70e+00		unknown_sccs	-11025
2shpA	525	3.56e+00	2shpA	c.45.1.2	32683
				d.93.1.1	40533
				d.93.1.1	40534
1q33A	292	5.32e+00		d.113.1.1	-10901
1cx4A	305	6.90e+00		b.82.3.2	59099
				b.82.3.2	59100
1pwaA	162	7.11e+00		b.42.1.1	-4009
1uj2A	252	7.76e+00		c.37.1.6	-7061
1qydA	313	7.97e+00		c.2.1.2	-5786
1ii7A	333	1.54e+01	1ii7A	d.159.1.4	62415
1j6qA	136	1.96e+01		b.40.9.1	77091
1be9A	119	2.41e+01	1pdr	b.36.1.1	24774
1fiqB	350	2.48e+01	1fiqB	d.87.2.1	40229
				d.145.1.3	41760
1mm4A	170	2.64e+01		f.4.1.2	79294
1i6lA	328	2.66e+01		c.26.1.1	66041
1ic8A	194	2.79e+01		a.4.1.1	76740
				a.35.1.1	76741
1vjfA	180	2.79e+01		d.116.1.1	-10941
1qtnB	95	2.89e+01	1pauB		
1fjgP	88	2.95e+01	1emwA	d.27.1.1	38444
1d2rA	326	2.98e+01	1d2rB	c.26.1.1	31572
1c9oA	66	3.05e+01	1mjc	b.40.4.5	25325
1vjqA	79	3.09e+01		unknown_sccs	-13478
1igqA	62	3.33e+01		b.34.1.3	66130
7ahlA	293	3.37e+01	7ahlA	f.6.1.1	43812
1earA	147	3.58e+01		b.107.1.1	64875
				d.58.38.1	64876
1vie	62	3.71e+01	1vie	b.34.4.1	24592