Best Alignments for T0272

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1q12A/T0272-1q12A-t2k-global-adpstyle1.a2m 1q12A/T0272-1q12A-t2k-global-adpstyle1.al 1.3403e+015.6078e+00 c.37.1.12
b.40.6.3
1q1bA/T0272-1q1bA-t2k-global-adpstyle1.a2m 1q1bA/T0272-1q1bA-t2k-global-adpstyle1.al 1.3495e+015.0645e+00 c.37.1.12
b.40.6.3
4eng/2eng-T0272-fssp-local-adpstyle5.a2m 4eng/2eng-T0272-fssp-local-adpstyle5.al 1.5187e+013.6418e+00 2eng b.52.1.1
1rci/2fha-T0272-fssp-local-adpstyle5.a2m 1rci/2fha-T0272-fssp-local-adpstyle5.al 2.4891e+017.9652e+00 2fha a.25.1.1
1ny9A/T0272-1ny9A-t2k-local-adpstyle5.a2m 1ny9A/T0272-1ny9A-t2k-local-adpstyle5.al 2.5928e+012.5266e+01 a.181.1.1
1oa7A/T0272-1oa7A-t04-global-adpstyle5.a2m 1oa7A/T0272-1oa7A-t04-global-adpstyle5.al 3.5208e+012.1449e+01 b.52.1.1
1avaC/T0272-1avaC-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1avaC/T0272-1avaC-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 3.7933e+011.9181e+01 1avaC b.42.4.1
1mjc/T0272-1mjc-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1mjc/T0272-1mjc-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 4.1284e+011.0375e+01 1mjc b.40.4.5
1shaA/T0272-1shaA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1shaA/T0272-1shaA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 4.3841e+011.0292e+01 1fmk d.93.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001