# List of top-scoring protein chains for T0272.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q12A 381 1.94e+00 b.40.6.3 -3959 c.37.1.12 -7177 1q1bA 381 1.96e+00 b.40.6.3 -3963 c.37.1.12 -7181 4eng 210 2.34e+00 2eng b.52.1.1 26898 2eng 210 2.35e+00 2eng b.52.1.1 26895 3eng 213 2.38e+00 2eng b.52.1.1 26897 1hd5A 213 2.42e+00 2eng b.52.1.1 26896 1i5nA 146 2.92e+00 1i5nA a.24.10.3 61805 1skoA 143 3.93e+00 1rci 173 4.91e+00 2fha a.25.1.1 16688 1ny9A 143 5.22e+00 a.181.1.1 86401 1rcd 173 5.51e+00 2fha a.25.1.1 16687 1gd5A 130 5.61e+00 1gd5A d.189.1.1 60439 1o7kA 131 5.64e+00 d.189.1.1 81144 1kq6A 141 5.70e+00 d.189.1.1 -9926 1l8fA 207 7.62e+00 b.52.1.1 84537 1oa7A 214 8.26e+00 b.52.1.1 86732 1vi3A 170 1.19e+01 b.17.1.2 -3066 1fjjA 159 1.22e+01 1fjjA b.17.1.2 59852 1repC 251 1.25e+01 1repC a.4.5.10 16125 a.4.5.10 16126 1m1cA 680 1.28e+01 e.42.1.1 78395 1k42A 168 1.33e+01 b.18.1.14 72032 1ma9A 458 1.35e+01 a.126.1.1 78887 a.126.1.1 78888 a.126.1.1 78889 1llc 325 1.38e+01 1hyhA c.2.1.5 30176 d.162.1.1 42143 1j78A 458 1.39e+01 a.126.1.1 66397 a.126.1.1 66398 a.126.1.1 66399 1kxpD 458 1.43e+01 a.126.1.1 73160 a.126.1.1 73161 a.126.1.1 73162 1rce 173 1.54e+01 2fha a.25.1.1 16691 1pvdA 555 1.64e+01 1zpdA c.31.1.3 31737 c.36.1.5 31777 c.36.1.9 31778 1pydA 556 1.65e+01 1zpdA c.31.1.3 31735 c.36.1.5 31773 c.36.1.9 31774 1qpbA 563 1.67e+01 1zpdA c.31.1.3 31739 c.36.1.5 31781 c.36.1.9 31782 1rh6A 55 1.70e+01 1m4jA 142 1.76e+01 d.109.1.2 78602 1avaC 181 1.79e+01 1avaC b.42.4.1 25604 1ssmA 242 1.90e+01 1cdzA 96 2.08e+01 1cdzA c.15.1.1 30925 1v5jA 108 2.11e+01 1ssqA 267 2.19e+01 1sstA 267 2.19e+01 1ko7A 314 2.32e+01 c.98.2.1 72797 c.91.1.2 72798 1fgtA 839 2.32e+01 1yge a.119.1.1 59830 b.12.1.1 59831 1fgqA 839 2.32e+01 1yge a.119.1.1 59826 b.12.1.1 59827 1fgrA 839 2.32e+01 1yge a.119.1.1 59828 b.12.1.1 59829 1fgmA 839 2.32e+01 a.119.1.1 65009 b.12.1.1 65010 1fgoA 839 2.32e+01 1yge a.119.1.1 59824 b.12.1.1 59825 1yge 839 2.34e+01 1yge a.119.1.1 19234 b.12.1.1 23634 1a8h 500 2.56e+01 1a8h a.27.1.1 16922 c.26.1.1 31589 1pm6A 72 2.81e+01 a.6.1.7 -386 1ysc 421 2.86e+01 1ivyA c.69.1.5 34652 1ju2A 536 2.90e+01 c.3.1.2 77169 d.16.1.1 77170 1cpy 421 2.97e+01 1ivyA c.69.1.5 34651 2fha 183 3.16e+01 2fha a.25.1.1 16674 1nar 290 3.27e+01 1nar c.1.8.5 28988 1jetA 517 3.27e+01 1jevA c.94.1.1 35718 1hrkA 359 3.30e+01 1hrkA c.92.1.1 61228 1ft5A 211 3.32e+01 1bvb a.138.1.3 19681 1lbqA 362 3.57e+01 c.92.1.1 77877 1sk7A 198 3.64e+01 1neu 124 3.85e+01 1neu b.1.1.1 19704