# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1j7dA 145 6.64e+00 1jatB d.20.1.1 62680 1shaA 104 7.12e+00 1fmk d.93.1.1 40424 1shbA 104 7.39e+00 1fmk d.93.1.1 40425 1o4rA 108 7.58e+00 d.93.1.1 -10624 1r8oA 96 8.82e+00 1ky3A 182 9.79e+00 c.37.1.8 73193 1g0dA 695 9.84e+00 1f13A b.1.18.9 60166 b.1.5.1 60167 b.1.5.1 60168 d.3.1.4 60169 1kq6A 141 1.02e+01 d.189.1.1 -9926 1ncg 110 1.07e+01 1edhA b.1.6.1 22193 1k42A 168 1.11e+01 b.18.1.14 72032 1f2fA 104 1.20e+01 1fmk d.93.1.1 40455 1fy7A 278 1.20e+01 1fy7A d.108.1.1 40817 1ktaA 365 1.31e+01 e.17.1.1 77533 1nciA 110 1.32e+01 1edhA b.1.6.1 22191 1avaC 181 1.34e+01 1avaC b.42.4.1 25604 1m1cA 680 1.34e+01 e.42.1.1 78395 1je5A 206 1.36e+01 1je5A b.40.4.7 62909 1gd5A 130 1.46e+01 1gd5A d.189.1.1 60439 1s4bP 674 1.47e+01 1on0A 158 1.50e+01 d.108.1.1 87095 1o7kA 131 1.58e+01 d.189.1.1 81144 1ufhA 180 1.62e+01 d.108.1.1 88485 1ekfA 365 1.65e+01 1ekfA e.17.1.1 59445 1f15A 218 1.66e+01 1f15B b.121.4.5 23320 1hdkA 141 2.13e+01 b.29.1.3 65807 1b9kA 238 2.13e+01 1qtsA b.1.10.1 22315 d.105.1.1 40791 1g86A 142 2.13e+01 b.29.1.3 70161 1lcl 142 2.13e+01 1lcl b.29.1.3 24216 1p5hA 428 2.22e+01 c.123.1.1 87802 1eggA 147 2.29e+01 1eggA d.169.1.1 42333 1egiA 147 2.38e+01 1eggA d.169.1.1 42331 1txb 73 2.41e+01 1txb g.7.1.1 44455 1dg6A 191 2.57e+01 1d4vB b.22.1.1 23883 1ej6D 418 2.66e+01 i.7.1.1 45970 1g0rA 293 2.70e+01 1g0rA c.68.1.6 34532 1fjjA 159 2.72e+01 1fjjA b.17.1.2 59852 1fxoA 293 2.86e+01 1g0rA c.68.1.6 34524 1d4vB 163 2.95e+01 1d4vB b.22.1.1 23884 1bpv 112 3.33e+01 1bpv b.1.2.1 22071 1ntyA 311 3.33e+01 1danU 121 3.42e+01 1boy b.1.2.1 21954 1iznB 277 3.68e+01 e.43.1.2 83848 1a65A 504 3.73e+01 1a65A b.6.1.3 23148 b.6.1.3 23149 b.6.1.3 23150 1hfuA 503 3.73e+01 b.6.1.3 65827 b.6.1.3 65828 b.6.1.3 65829 1bp3B 211 3.89e+01 1axiB b.1.2.1 22031 b.1.2.1 22032 1nkqA 259 3.96e+01