# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1on0A 158 1.13e+00 d.108.1.1 87095 1ufhA 180 1.19e+00 d.108.1.1 88485 1avaC 181 1.25e+00 1avaC b.42.4.1 25604 1r8oA 96 2.60e+00 1shaA 104 2.94e+00 1fmk d.93.1.1 40424 1shbA 104 3.11e+00 1fmk d.93.1.1 40425 1q15A 503 3.20e+00 c.26.2.1 -6625 d.153.1.1 -11400 1mjgM 729 3.85e+00 e.26.1.3 79204 1a65A 504 4.25e+00 1a65A b.6.1.3 23148 b.6.1.3 23149 b.6.1.3 23150 1hfuA 503 4.39e+00 b.6.1.3 65827 b.6.1.3 65828 b.6.1.3 65829 1o4rA 108 4.88e+00 d.93.1.1 -10624 1gd5A 130 4.97e+00 1gd5A d.189.1.1 60439 1f2fA 104 5.40e+00 1fmk d.93.1.1 40455 1krhA 338 5.42e+00 b.43.4.2 72891 c.25.1.2 72892 d.15.4.2 72893 1kq6A 141 5.67e+00 d.189.1.1 -9926 1tvdA 116 6.49e+00 1tvdA b.1.1.1 20650 1oaoC 729 6.51e+00 e.26.1.3 86746 1iw7C 1119 7.41e+00 e.29.1.1 71474 1egiA 147 7.64e+00 1eggA d.169.1.1 42331 1gu3A 149 7.77e+00 b.18.1.14 76350 1b9kA 238 8.31e+00 1qtsA b.1.10.1 22315 d.105.1.1 40791 1eggA 147 8.59e+00 1eggA d.169.1.1 42333 1o7kA 131 8.85e+00 d.189.1.1 81144 1cdi 179 9.10e+00 1cdy b.1.1.1 19727 b.1.1.3 21666 1g0rA 293 9.65e+00 1g0rA c.68.1.6 34532 1fxoA 293 9.67e+00 1g0rA c.68.1.6 34524 1ky3A 182 1.02e+01 c.37.1.8 73193 1danU 121 1.05e+01 1boy b.1.2.1 21954 1d4vB 163 1.07e+01 1d4vB b.22.1.1 23884 1aipE 405 1.08e+01 1efcA b.43.3.1 25699 b.44.1.1 25739 c.37.1.8 32134 1b35A 260 1.20e+01 1b35A b.121.4.1 23333 1bmdA 327 1.22e+01 1bmdA c.2.1.5 30139 d.162.1.1 42106 1bdmA 327 1.24e+01 1bmdA c.2.1.5 30137 d.162.1.1 42104 1ha3A 405 1.30e+01 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1hdkA 141 1.31e+01 b.29.1.3 65807 1g86A 142 1.31e+01 b.29.1.3 70161 1lcl 142 1.31e+01 1lcl b.29.1.3 24216 1mjc 69 1.32e+01 1mjc b.40.4.5 25319 1bdmB 327 1.35e+01 1bmdA c.2.1.5 30138 d.162.1.1 42105 1dg6A 191 1.39e+01 1d4vB b.22.1.1 23883 1p5hA 428 1.41e+01 c.123.1.1 87802 1fy7A 278 1.42e+01 1fy7A d.108.1.1 40817 1l1jA 239 1.43e+01 b.47.1.1 84516 1exmA 405 1.51e+01 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1nciA 110 1.53e+01 1edhA b.1.6.1 22191 1ej6D 418 1.57e+01 i.7.1.1 45970 1c1lA 136 1.63e+01 1c1lA b.29.1.3 24219 1ncg 110 1.63e+01 1edhA b.1.6.1 22193 1ekfA 365 1.65e+01 1ekfA e.17.1.1 59445 1iq4A 179 1.69e+01 1iq4A d.77.1.1 62641 1ktaA 365 1.75e+01 e.17.1.1 77533 1kyfA 247 1.80e+01 b.1.10.1 73220 d.105.1.1 73221 1qtsA 247 1.81e+01 1qtsA b.1.10.1 22313 d.105.1.1 40789 1je5A 206 1.84e+01 1je5A b.40.4.7 62909 1g0dA 695 1.85e+01 1f13A b.1.18.9 60166 b.1.5.1 60167 b.1.5.1 60168 d.3.1.4 60169 1kyaA 499 1.91e+01 b.6.1.3 73203 b.6.1.3 73204 b.6.1.3 73205 1lj9A 144 1.93e+01 a.4.5.28 78035 1ntyA 311 1.93e+01 1bp3B 211 1.97e+01 1axiB b.1.2.1 22031 b.1.2.1 22032 1g9mC 185 2.10e+01 1cdy b.1.1.1 19721 b.1.1.3 21660 1cdy 178 2.11e+01 1cdy b.1.1.1 19719 b.1.1.3 21658 1sk7A 198 2.11e+01 1csp 67 2.16e+01 1mjc b.40.4.5 25321 1ckmA 330 2.16e+01 1ckmA b.40.4.6 25358 d.142.2.3 41585 1cknA 330 2.21e+01 1ckmA b.40.4.6 25360 d.142.2.3 41587 1i1qB 192 2.23e+01 1qdlB c.23.16.1 61544 2hft 218 2.24e+01 1boy b.1.2.1 21951 b.1.2.1 21952 1efcA 393 2.24e+01 1efcA b.43.3.1 25680 b.44.1.1 25720 c.37.1.8 32113 1kv7A 488 2.32e+01 b.6.1.3 68873 b.6.1.3 68874 b.6.1.3 68875 1e8yA 966 2.39e+01 1e8xA a.118.1.6 19152 b.7.1.1 23187 d.15.1.5 37635 d.144.1.4 41715 1f3rB 257 2.41e+01 1f3rB b.1.1.1 20417 b.1.1.1 20416 1nkqA 259 2.45e+01 1i3zA 103 2.50e+01 d.93.1.1 83667 1gjxA 81 2.52e+01 b.84.1.1 65222 1k42A 168 2.59e+01 b.18.1.14 72032 1cyw 205 2.61e+01 1cyx b.6.1.2 23024 1h5rA 293 2.63e+01 c.68.1.6 65623 2hgsA 474 2.66e+01 2hgsA c.30.1.4 31722 d.142.1.6 75997 1o5uA 101 2.71e+01 b.82.1.8 -4845 1s68A 249 2.74e+01 unknown_sccs -11253 1q5hA 147 2.75e+01 b.85.4.1 -5047 1h9sA 140 2.79e+01 1b9mA b.40.6.2 60843 b.40.6.2 60844 1c8pA 102 2.81e+01 1c8pA b.1.2.1 22040 1cqxA 403 2.81e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1m1cA 680 2.82e+01 e.42.1.1 78395 1lcyA 325 2.83e+01 b.36.1.4 73834 b.47.1.1 73835 1kk1A 410 2.85e+01 b.43.3.1 72634 b.44.1.1 72635 c.37.1.8 72636 1f7tA 122 2.87e+01 1f7lA d.150.1.2 59667 3cd4 182 2.88e+01 1cdy b.1.1.1 19720 b.1.1.3 21659 1f15A 218 2.91e+01 1f15B b.121.4.5 23320 1shdA 107 2.96e+01 1fmk d.93.1.1 40440 1hxs2 272 2.98e+01 1pxvA 183 2.99e+01 d.3.1.1 -8881 1mh9A 197 2.99e+01 c.108.1.8 79118 1bnr 110 3.01e+01 1b20A d.1.1.2 36206 1kdxA 81 3.02e+01 1kdxA a.12.1.1 16375 2fnbA 95 3.05e+01 2fnbA b.1.2.1 21979 1sb0A 87 3.08e+01 a.12.1.1 -455 1hb5A 394 3.10e+01 i.6.1.1 65752 1hx6A 394 3.10e+01 1cjdA b.121.2.1 58995 b.121.2.1 58996 1lckA 175 3.11e+01 1lckA b.34.2.1 24552 d.93.1.1 40421 1g1tA 157 3.12e+01 d.169.1.1 65104 g.3.11.1 65105 1szwA 379 3.15e+01 unknown_sccs -10164 1d2qA 173 3.17e+01 1d4vB b.22.1.1 23894 1cyx 205 3.18e+01 1cyx b.6.1.2 23023 1b20A 110 3.21e+01 1b20A d.1.1.2 36207 1bj8 109 3.21e+01 1bquA b.1.2.1 22070 1fc4A 401 3.23e+01 1bs0A c.67.1.4 59760 1bk0 331 3.24e+01 1bk0 b.82.2.1 28118 1odmA 331 3.26e+01 b.82.2.1 86875 1neu 124 3.27e+01 1neu b.1.1.1 19704 1nwbA 124 3.33e+01 b.124.1.1 86296 1pmi 440 3.38e+01 1pmi b.82.1.3 28114 1kt8A 365 3.40e+01 e.17.1.1 77531 1txb 73 3.43e+01 1txb g.7.1.1 44455 1aozA 552 3.46e+01 1aozA b.6.1.3 23124 b.6.1.3 23125 b.6.1.3 23126 1fftB 315 3.47e+01 1cyx b.6.1.2 23025 f.17.2.1 43628 1a3k 137 3.48e+01 1a3k b.29.1.3 24218 1i7qA 519 3.49e+01 1qdlA d.161.1.1 61901 1esl 162 3.52e+01 1esl d.169.1.1 42353 g.3.11.1 44225 1oghA 204 3.56e+01 b.85.4.1 86994 1onjA 61 3.56e+01 g.7.1.1 -12530 1rie 129 3.66e+01 1rie b.33.1.1 24427 3ebx 62 3.69e+01 3ebx g.7.1.1 44389 1iq9A 61 3.78e+01 g.7.1.1 -12528 1st0A 337 3.85e+01 unknown_sccs -9014 unknown_sccs -9474