# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ntyA 311 1.86e+00 1egiA 147 2.01e+00 1eggA d.169.1.1 42331 1skoA 143 2.24e+00 1vddA 228 2.42e+00 1eggA 147 3.24e+00 1eggA d.169.1.1 42333 1avaC 181 4.14e+00 1avaC b.42.4.1 25604 1l1eA 287 4.49e+00 c.66.1.18 73454 1bpv 112 5.22e+00 1bpv b.1.2.1 22071 1neu 124 5.47e+00 1neu b.1.1.1 19704 1hl6A 165 7.65e+00 d.58.7.1 83609 1dyqA 234 8.53e+00 3seb b.40.2.2 59140 d.15.6.1 59141 1bp3B 211 9.19e+00 1axiB b.1.2.1 22031 b.1.2.1 22032 1lcl 142 1.07e+01 1lcl b.29.1.3 24216 1hdkA 141 1.13e+01 b.29.1.3 65807 1rpa 342 1.16e+01 1cviA c.60.1.2 33983 1op4A 159 1.20e+01 b.1.6.1 -2794 1omwA 689 1.22e+01 a.91.1.1 87086 b.55.1.1 87087 d.144.1.7 87088 1g86A 142 1.24e+01 b.29.1.3 70161 2eng 210 1.25e+01 2eng b.52.1.1 26895 1nb5I 98 1.28e+01 d.17.1.2 80381 1m4jA 142 1.30e+01 d.109.1.2 78602 1rfa 79 1.50e+01 1c1yB d.15.1.5 37620 1txb 73 1.59e+01 1txb g.7.1.1 44455 1lx8A 55 1.59e+01 a.6.1.7 84734 2hft 218 1.65e+01 1boy b.1.2.1 21951 b.1.2.1 21952 1pmy 123 1.72e+01 1bqk b.6.1.1 22888 1shaA 104 1.84e+01 1fmk d.93.1.1 40424 1on0A 158 1.84e+01 d.108.1.1 87095 1rh6A 55 1.94e+01 1boy 219 1.98e+01 1boy b.1.2.1 21955 b.1.2.1 21956 1ipd 345 2.00e+01 1cnzA c.77.1.1 35038 1h4rA 314 2.08e+01 a.11.2.1 65616 b.55.1.5 65617 d.15.1.4 65618 1dfx 125 2.14e+01 1dfx b.1.13.1 22367 g.41.5.2 45255 1h3fA 432 2.14e+01 c.26.1.1 76631 d.66.1.4 76632 1fc4A 401 2.41e+01 1bs0A c.67.1.4 59760 1i5nA 146 2.46e+01 1i5nA a.24.10.3 61805 1r8oA 96 2.47e+01 1nkoA 132 2.58e+01 b.1.1.1 85829 1cdzA 96 2.58e+01 1cdzA c.15.1.1 30925 1htrB 329 2.61e+01 1smrA 1ufhA 180 2.64e+01 d.108.1.1 88485 1q7lA 198 2.78e+01 c.56.5.4 -7886 1cyu 98 2.79e+01 1stfI d.17.1.2 38004 1shbA 104 2.99e+01 1fmk d.93.1.1 40425 1o7kA 131 3.05e+01 d.189.1.1 81144 1o4rA 108 3.07e+01 d.93.1.1 -10624 1mn4A 282 3.22e+01 b.2.5.7 79313 1k42A 168 3.30e+01 b.18.1.14 72032 1mp9A 198 3.44e+01 a.74.1.2 -1127 a.74.1.2 -1128 1qmuA 380 3.49e+01 1qmuA b.3.2.1 22534 c.56.5.1 33827 1uuhA 159 3.50e+01 d.169.1.4 -11651 1s4qA 228 3.58e+01 c.37.1.1 -6975 1f2fA 104 3.58e+01 1fmk d.93.1.1 40455 1hd5A 213 3.71e+01 2eng b.52.1.1 26896 1kq6A 141 3.75e+01 d.189.1.1 -9926 7ahlA 293 3.79e+01 7ahlA f.6.1.1 43812 1ncg 110 3.88e+01 1edhA b.1.6.1 22193 1dr8B 344 3.94e+01 1cnzA c.77.1.1 35052