(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html
Citations (SAM, SAM-T99, HMMs)
- R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
- K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
- A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
Sequence numbers correspond to the following labels:
-
- T0272 1wj9, Thermus thermophilus
-
-
10 20 30 40 50
| | | | |
1 ..MWLTKLVLNPASRAARRDL.ANPYEM..HRTL.SKAVSRALEEGRERL..LWRLE..P.ARGL
2 ..MYLTRLTLDPRSAQARRDL.ADAYDM..HRTL.VRAFVRDERDAPGRF..LWRLE..PgADAW
3 msVWLTRIVPDPRSRDARRDLgGNDSAMglHRRLmSLYPCDAGPDPRARFgvLFRIEdtP.A-GA
60 70 80 90 100
| | | | |
1 EPPVVLVQTLTEPDWSVLD..EGYAQVF..PP..KPFH.PAL.KPGQRLRFRLRANP.....AKR
2 ASPTLLVQSCESGDWDVLQglPGYLQR-..PAecKALDlEALiRPQWRYRFRLLANPtvtraGKR
3 H---ILLQSAHEPDLTRLP..DGYGQAItrPL..DPLL.DAL.KPGLTIRYRCTASP.....VRK
110
|
1 LAATG....
2 RGLLGeae.
3 PGANTral.