# List of top-scoring protein chains for T0272.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iruE 241 1.33e+00 d.153.1.4 71356 1nwaA 203 2.10e+00 d.58.28.1 86295 1skoA 143 3.01e+00 1q8rA 120 3.07e+00 unknown_sccs -10422 1gehA 444 3.24e+00 c.1.14.1 65181 d.58.9.1 65182 1b4pA 217 3.57e+00 a.45.1.1 83158 c.47.1.5 83159 4eng 210 3.70e+00 2eng b.52.1.1 26898 2eng 210 3.71e+00 2eng b.52.1.1 26895 3eng 213 3.77e+00 2eng b.52.1.1 26897 1hd5A 213 3.80e+00 2eng b.52.1.1 26896 1hna 217 4.63e+00 1b8xA a.45.1.1 17604 c.47.1.5 32898 2gtuA 217 4.64e+00 1b8xA a.45.1.1 17605 c.47.1.5 32899 1jxsA 98 5.11e+00 a.4.5.14 84254 1jqeA 292 5.17e+00 c.66.1.19 71789 1jqdA 292 5.17e+00 c.66.1.19 71787 1h0cA 392 5.69e+00 c.67.1.3 83424 1l8fA 207 5.92e+00 b.52.1.1 84537 1oa7A 214 6.46e+00 b.52.1.1 86732 1sezA 504 7.12e+00 c.3.1.2 -6036 d.16.1.5 -9256 1na0A 125 7.24e+00 k.38.1.1 85479 2fha 183 8.92e+00 2fha a.25.1.1 16674 1kcxA 518 9.65e+00 b.92.1.3 -5074 c.1.9.6 -5426 1j04A 392 1.02e+01 c.67.1.3 -8171 6gswA 217 1.11e+01 1b8xA a.45.1.1 17631 c.47.1.5 32927 6gsxA 217 1.11e+01 1b8xA a.45.1.1 17641 c.47.1.5 32935 2gstA 217 1.12e+01 1b8xA a.45.1.1 17629 c.47.1.5 32923 6gsvA 217 1.12e+01 1b8xA a.45.1.1 17633 c.47.1.5 32925 1sltA 134 1.14e+01 1c1lA b.29.1.3 24186 6gsuA 217 1.15e+01 1b8xA a.45.1.1 17635 c.47.1.5 32929 3bifA 468 1.19e+01 1bif c.37.1.7 31962 c.60.1.4 34008 1bif 469 1.20e+01 1bif c.37.1.7 31961 c.60.1.4 34003 1kkmH 100 1.20e+01 d.94.1.1 72657 2bifA 469 1.23e+01 1bif c.37.1.7 31963 c.60.1.4 34009 1mtcA 217 1.28e+01 a.45.1.1 85103 c.47.1.5 85104 1sphA 88 1.47e+01 1ptf d.94.1.1 40544 1rh5B 74 1.48e+01 unknown_sccs -12198 2hpr 87 1.64e+01 1ptf d.94.1.1 40546 1jem 87 1.70e+01 1ptf d.94.1.1 40548 1qvbA 481 1.71e+01 1qvbA c.1.8.4 28983 1bxsA 501 1.71e+01 1bpwA c.82.1.1 35357 1v2dA 381 1.72e+01 1g0uD 241 1.76e+01 d.153.1.4 41949 1hh1A 143 2.06e+01 1gefA c.52.1.18 61036 1vetA 124 2.07e+01 1auiB 169 2.10e+01 1auiB a.39.1.5 17325 1mf8B 170 2.11e+01 a.39.1.5 79041 1pwhA 327 2.30e+01 c.79.1.1 -8524 1v2yA 105 2.39e+01 d.15.1.1 -9148 1dutA 133 2.53e+01 1dun b.85.4.1 28355 1ihsI 22 2.56e+01 1uijA 416 2.57e+01 1f7dA 136 2.60e+01 1dun b.85.4.1 28353 1ollA 188 2.62e+01 b.1.1.4 -2690 b.1.1.4 -2691 1ja9A 274 2.78e+01 c.2.1.2 62817 1na3A 91 2.81e+01 k.38.1.1 85481 1m0fB 68 2.94e+01 i.6.1.1 78337 1jmvA 141 3.05e+01 c.26.2.4 66897 1j9lA 247 3.10e+01 c.106.1.1 62762 1cwtA 178 3.30e+01 1c25 c.46.1.1 32702 1l4aD 87 3.38e+01 h.1.15.1 73562 2cblA 305 3.52e+01 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1lze 129 3.53e+01 3lzt d.2.1.2 36323 1c72A 219 3.55e+01 1b8xA a.45.1.1 17663 c.47.1.5 32957 1qb0A 211 3.74e+01 1c25 c.46.1.1 32699 1jthA 82 3.76e+01 h.1.15.1 67270 1gsuA 219 3.80e+01 1b8xA a.45.1.1 17661 c.47.1.5 32955 1b47A 304 3.82e+01 2cblA a.39.1.7 17381 a.48.1.1 17775 d.93.1.1 40529 1p6fA 242 3.87e+01 b.1.1.4 -2692 b.1.1.4 -2693 3gtuB 224 3.91e+01 1b8xA a.45.1.1 17612 c.47.1.5 32906 1lslA 113 3.97e+01 g.60.1.1 78178 g.60.1.1 78179