# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1je5A 206 9.19e-01 1je5A b.40.4.7 62909 1avgI 142 1.17e+00 1avgI b.60.1.3 27229 1jnyA 435 1.66e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1a2zA 220 1.91e+00 1a2zA c.56.4.1 33794 1k6xA 352 1.95e+00 c.2.1.2 68238 1ohfA 644 2.05e+00 unknown_sccs -3012 1f0xA 571 2.45e+00 1f0xA d.58.32.2 39483 d.145.1.1 41746 1nciA 110 2.73e+00 1edhA b.1.6.1 22191 1e4yA 214 2.86e+00 1zin c.37.1.1 31901 g.41.2.1 45181 1q9jA 422 3.36e+00 1jhfA 202 3.42e+00 a.4.5.2 63057 b.87.1.1 63058 1jsdA 319 3.47e+00 b.19.1.2 63258 1kmvA 186 3.77e+00 c.71.1.1 72757 1a8vA 121 4.12e+00 1a62 a.140.3.1 64712 b.40.4.5 64713 1ckmA 330 4.44e+00 1ckmA b.40.4.6 25358 d.142.2.3 41585 1avwB 171 4.53e+00 1wba b.42.4.1 25599 1v2bA 177 4.88e+00 1t8qA 336 5.16e+00 1a3k 137 6.07e+00 1a3k b.29.1.3 24218 1b6rA 355 6.28e+00 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1fuxA 166 7.08e+00 1fjjA b.17.1.2 60034 1ig8A 486 7.47e+00 2yhx c.55.1.3 64746 c.55.1.3 64747 1kekA 1231 7.52e+00 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 2eifA 136 7.57e+00 1bkb b.34.5.2 24607 b.40.4.5 25339 1fjjA 159 7.62e+00 1fjjA b.17.1.2 59852 1ekjA 221 9.18e+00 1ekjB c.53.2.1 33364 1nwaA 203 9.36e+00 d.58.28.1 86295 1ass 159 9.37e+00 1a6dA c.8.5.2 30818 1ag6 99 9.40e+00 1plc b.6.1.1 22857 1ejrB 101 1.01e+01 1ubpB b.85.3.1 28320 1o5uA 101 1.13e+01 b.82.1.8 -4845 830cA 168 1.14e+01 1ck7A d.92.1.11 40400 1qr0A 228 1.14e+01 1qr0A d.150.1.1 59038 d.150.1.1 59039 1b0pA 1231 1.19e+01 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1mfa 247 1.24e+01 1mfa b.1.1.1 19888 b.1.1.1 19889 1q7lA 198 1.28e+01 c.56.5.4 -7886 1egiA 147 1.28e+01 1eggA d.169.1.1 42331 1mg4A 113 1.29e+01 d.15.11.1 84953 1nksA 194 1.30e+01 1nksA c.37.1.1 31886 1nrzA 164 1.31e+01 c.38.1.1 86131 1ux6A 350 1.32e+01 unknown_sccs -3451 unknown_sccs -12886 1vhoA 346 1.32e+01 unknown_sccs -4283 c.56.5.4 -7893 1fmjA 351 1.35e+01 c.37.1.5 59879 8dfr 189 1.39e+01 1aoeA c.71.1.1 34895 1e0tA 470 1.41e+01 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1mjc 69 1.42e+01 1mjc b.40.4.5 25319 1ejxB 101 1.43e+01 b.85.3.1 83183 1ne9A 335 1.51e+01 d.108.1.4 -10805 d.108.1.4 -10806 1shwA 138 1.57e+01 1avaC 181 1.61e+01 1avaC b.42.4.1 25604 1fnoA 417 1.61e+01 c.56.5.4 75841 d.58.19.1 70145 1vi7A 217 1.90e+01 unknown_sccs -9115 unknown_sccs -10052 1mxiA 160 2.04e+01 c.116.1.1 79646 1bftA 101 2.10e+01 1a3qA b.1.18.1 21934 2mspA 126 2.13e+01 1mspA b.1.11.2 22335 1oruA 195 2.13e+01 unknown_sccs -4390 1w2wA 211 2.14e+01 1o63A 219 2.14e+01 c.94.1.1 -8691 1c9oA 66 2.18e+01 1mjc b.40.4.5 25325 1nwpA 128 2.24e+01 1nwpA b.6.1.1 23011 1mspA 126 2.30e+01 1mspA b.1.11.2 22333 1mjfA 281 2.33e+01 c.66.1.17 79198 1lniA 96 2.39e+01 d.1.1.2 74046 1vheA 373 2.42e+01 unknown_sccs -4280 c.56.5.4 -7890 1dabA 539 2.44e+01 1dabA b.80.1.7 28049 1ul7A 102 2.50e+01 unknown_sccs -11020 1eerB 227 2.52e+01 1eerB b.1.2.1 22011 b.1.2.1 22012 2cblA 305 2.52e+01 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1lv7A 257 2.54e+01 c.37.1.20 78232 1k9jA 139 2.58e+01 d.169.1.1 68353 1j2rA 199 2.62e+01 unknown_sccs -6799 1lwdA 413 2.64e+01 c.77.1.1 78265 1gu3A 149 2.66e+01 b.18.1.14 76350 1f6fB 210 2.66e+01 1axiB b.1.2.1 22033 b.1.2.1 22034 1uurA 473 2.67e+01 a.47.1.1 -968 b.2.5.5 -2904 d.93.1.1 -10632 1r8oA 96 2.74e+01 1mkfA 382 2.80e+01 b.116.1.1 79232 1o26A 232 2.81e+01 d.207.1.1 86566 1uwzA 136 2.86e+01 1uxy 340 2.89e+01 2mbr d.145.1.2 41748 d.146.1.1 41761 1sl4A 155 2.95e+01 4pep 326 2.99e+01 1smrA b.50.1.2 26843 1mgrA 99 3.02e+01 d.1.1.2 79106 1epfA 191 3.02e+01 2ncm b.1.1.4 21694 b.1.1.4 21695 1m6jA 261 3.02e+01 c.1.1.1 78693 1fts 295 3.04e+01 1ng1 a.24.13.1 16968 c.37.1.10 32279 1aw7A 194 3.13e+01 1aw7A b.40.2.2 25164 d.15.6.1 37753 1t9fA 187 3.20e+01 1fukA 165 3.22e+01 1fukA c.37.1.19 32409 1a49A 530 3.25e+01 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1feuA 206 3.33e+01 1feuA b.53.1.1 59801 1jk3A 158 3.35e+01 d.92.1.11 66790 1mmq 170 3.40e+01 1hfc d.92.1.11 40396 1fsz 372 3.41e+01 1fsz c.32.1.1 31750 d.79.2.1 39802 1qovH 260 3.50e+01 6prcH b.41.1.1 25464 f.23.10.1 43457 1vjzA 341 3.64e+01 c.1.8.3 -5318 1oaoC 729 3.71e+01 e.26.1.3 86746 1j1iA 296 3.74e+01 c.69.1.10 83977 1qvbA 481 3.80e+01 1qvbA c.1.8.4 28983 1qg3A 195 3.84e+01 1qg3A b.1.2.1 21993 b.1.2.1 21994 1my7A 114 3.84e+01 b.1.18.1 79675 1i3zA 103 3.85e+01 d.93.1.1 83667 1lqtA 456 3.85e+01 c.3.1.1 74198 c.4.1.1 74199 4ubpB 126 3.89e+01 1ubpB b.85.3.1 28345 2mcm 112 3.89e+01 2mcm b.1.7.1 22207 1zin 217 3.91e+01 1zin c.37.1.1 31915 g.41.2.1 45178 1ble 163 3.96e+01 1ble c.38.1.1 32475 1h9sA 140 4.00e+01 1b9mA b.40.6.2 60843 b.40.6.2 60844