# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1pn0A	665	9.03e-01		c.3.1.2	-5992
				c.47.1.10	-7513
				d.16.1.2	-9210
1fohA	664	2.49e+00	1fohA	c.3.1.2	30381
				c.47.1.10	33078
				d.16.1.2	37900
1sddA	306	3.33e+00			
1dik	874	4.05e+00	1dik	c.1.12.2	29304
				c.8.1.1	30702
				d.142.1.5	41572
1lv7A	257	4.12e+00		c.37.1.20	78232
1v4vA	376	5.24e+00		c.87.1.3	-8583
1jvnA	555	5.52e+00		c.1.2.1	67355
				c.23.16.1	67356
1je5A	206	5.92e+00	1je5A	b.40.4.7	62909
1t8qA	336	7.51e+00			
1qwtA	255	8.01e+00		unknown_sccs	-3329
1oruA	195	8.40e+00		unknown_sccs	-4390
1kblA	873	8.87e+00		c.1.12.2	68384
				c.8.1.1	68385
				d.142.1.5	68386
1v2dA	381	9.06e+00			
1b6rA	355	1.16e+01	1b6rA	b.84.2.1	28241
				c.30.1.1	31648
				d.142.1.2	41493
1avgI	142	1.17e+01	1avgI	b.60.1.3	27229
1tkiA	321	1.25e+01	1tkiA	d.144.1.7	41638
1bj4A	470	1.32e+01	1bj4A	c.67.1.4	34479
1qv9A	283	1.47e+01		unknown_sccs	-6888
3tmkA	216	1.48e+01	3tmkA	c.37.1.1	31920
1u08A	386	1.68e+01			
1fh0A	221	1.68e+01	1cs8A	d.3.1.1	59832
830cA	168	1.83e+01	1ck7A	d.92.1.11	40400
1nszA	347	1.98e+01		b.30.5.4	80724
1pba	81	1.99e+01	1pytA	d.58.3.1	39067
1kk1A	410	2.04e+01		b.43.3.1	72634
				b.44.1.1	72635
				c.37.1.8	72636
1jd0A	263	2.07e+01	2cba	b.74.1.1	62888
1ca1	370	2.08e+01	1ca1	a.124.1.1	19340
				b.12.1.3	23648
1k7jA	206	2.65e+01		d.115.1.1	72103
1fp1D	372	2.65e+01	1fpqA	a.4.5.29	59939
				c.66.1.12	59940
1h6zA	913	2.85e+01		c.1.12.2	70906
				c.8.1.1	70907
				d.142.1.5	70908
1lr0A	129	3.12e+01		d.212.1.1	74213
1sltA	134	3.14e+01	1c1lA	b.29.1.3	24186
1gln	468	3.22e+01	1gln	a.97.1.1	18752
				c.26.1.1	31588
1sl4A	155	3.41e+01			
1tfr	305	3.44e+01	1tfr	a.60.7.1	18081
				c.120.1.2	33351
1h1nA	305	3.45e+01		c.1.8.3	70855
1n0uA	842	3.64e+01		b.43.3.1	79757
				c.37.1.8	79758
				d.14.1.1	79759
				d.58.11.1	79760
				d.58.11.1	79761
1vg8A	207	3.65e+01			
1fts	295	3.80e+01	1ng1	a.24.13.1	16968
				c.37.1.10	32279
1hdmA	201	3.88e+01	1iakA	b.1.1.2	21583
				d.19.1.1	38157
1nj4A	363	3.88e+01		b.105.1.1	80545
				e.3.1.1	80546
1qtqA	553	3.89e+01	1gtrA	b.53.1.2	26940
				c.26.1.1	31579
1jk3A	158	3.94e+01		d.92.1.11	66790