# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w2wA 211 6.21e-01 1jvnA 555 6.91e-01 c.1.2.1 67355 c.23.16.1 67356 1je5A 206 7.65e-01 1je5A b.40.4.7 62909 1avgI 142 1.31e+00 1avgI b.60.1.3 27229 830cA 168 2.20e+00 1ck7A d.92.1.11 40400 1bkzA 135 2.43e+00 1a3k b.29.1.3 24202 1ckmA 330 2.86e+00 1ckmA b.40.4.6 25358 d.142.2.3 41585 1f0xA 571 3.41e+00 1f0xA d.58.32.2 39483 d.145.1.1 41746 1tkiA 321 3.56e+00 1tkiA d.144.1.7 41638 1jk3A 158 4.40e+00 d.92.1.11 66790 1nwaA 203 4.75e+00 d.58.28.1 86295 1pn0A 665 4.91e+00 c.3.1.2 -5992 c.47.1.10 -7513 d.16.1.2 -9210 1cf9A 753 4.92e+00 1cf9A c.23.16.3 31441 e.5.1.1 42815 2eifA 136 5.14e+00 1bkb b.34.5.2 24607 b.40.4.5 25339 1v2bA 177 5.55e+00 1mmq 170 5.72e+00 1hfc d.92.1.11 40396 1oruA 195 5.86e+00 unknown_sccs -4390 1p80A 753 6.04e+00 c.23.16.3 -6547 e.5.1.1 -11840 1jsdA 319 6.07e+00 b.19.1.2 63258 1k6xA 352 6.57e+00 c.2.1.2 68238 1shwA 138 6.66e+00 1t8qA 336 6.85e+00 1jhfA 202 7.17e+00 a.4.5.2 63057 b.87.1.1 63058 1fh0A 221 8.16e+00 1cs8A d.3.1.1 59832 1nkqA 259 8.51e+00 1a49A 530 8.68e+00 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 3pcgA 200 9.12e+00 3pchA b.3.6.1 22647 1mjc 69 9.13e+00 1mjc b.40.4.5 25319 1qr0A 228 9.62e+00 1qr0A d.150.1.1 59038 d.150.1.1 59039 1ux6A 350 9.70e+00 unknown_sccs -3451 unknown_sccs -12886 1sltA 134 9.89e+00 1c1lA b.29.1.3 24186 1nciA 110 1.05e+01 1edhA b.1.6.1 22191 1gln 468 1.06e+01 1gln a.97.1.1 18752 c.26.1.1 31588 1j09A 468 1.10e+01 a.97.1.1 77025 c.26.1.1 77026 1ea5A 537 1.15e+01 2bce c.69.1.1 34592 1s0yA 76 1.16e+01 d.80.1.1 -10434 1mvuB 121 1.22e+01 b.1.1.1 -2250 1f39A 101 1.26e+01 1umuA b.87.1.1 28386 1nszA 347 1.29e+01 b.30.5.4 80724 1o5uA 101 1.33e+01 b.82.1.8 -4845 1qtqA 553 1.34e+01 1gtrA b.53.1.2 26940 c.26.1.1 31579 1ca1 370 1.38e+01 1ca1 a.124.1.1 19340 b.12.1.3 23648 1bftA 101 1.40e+01 1a3qA b.1.18.1 21934 1esmA 316 1.42e+01 1esmA c.37.1.6 31953 1t9fA 187 1.42e+01 1lv7A 257 1.54e+01 c.37.1.20 78232 1chmA 401 1.56e+01 1chmA c.55.2.1 33545 d.127.1.1 41142 1gzwA 134 1.62e+01 b.29.1.3 -3412 1p0iA 529 1.74e+01 c.69.1.1 -8291 1qg3A 195 1.76e+01 1qg3A b.1.2.1 21993 b.1.2.1 21994 1a3k 137 1.77e+01 1a3k b.29.1.3 24218 1ag6 99 1.80e+01 1plc b.6.1.1 22857 1fohA 664 1.82e+01 1fohA c.3.1.2 30381 c.47.1.10 33078 d.16.1.2 37900 1qhlA 227 1.97e+01 1qhlA c.37.1.12 32382 1fna 93 1.98e+01 1fnf b.1.2.1 21971 1jd0A 263 2.22e+01 2cba b.74.1.1 62888 1my7A 114 2.40e+01 b.1.18.1 79675 1o63A 219 2.40e+01 c.94.1.1 -8691 1obdA 306 2.43e+01 d.143.1.1 86767 1iab 200 2.45e+01 1iae d.92.1.8 40312 1b6rA 355 2.46e+01 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1ne9A 335 2.47e+01 d.108.1.4 -10805 d.108.1.4 -10806 1mfa 247 2.51e+01 1mfa b.1.1.1 19888 b.1.1.1 19889 1lslA 113 2.59e+01 g.60.1.1 78178 g.60.1.1 78179 1c44A 123 2.59e+01 1qndA d.106.1.1 40795 1r8oA 96 2.61e+01 1ejrB 101 2.70e+01 1ubpB b.85.3.1 28320 1s4nA 348 2.70e+01 unknown_sccs -8262 1c24A 263 2.74e+01 1c24A d.127.1.1 41148 1iae 200 2.78e+01 1iae d.92.1.8 40311 1omhA 293 2.86e+01 unknown_sccs -10527 3tmkA 216 2.88e+01 3tmkA c.37.1.1 31920 1ekjA 221 2.90e+01 1ekjB c.53.2.1 33364 1bquA 215 2.91e+01 1bquA b.1.2.1 22066 b.1.2.1 22067 1nykA 165 2.99e+01 b.33.1.1 86408 1rhfA 182 3.02e+01 b.1.1.1 -2335 b.1.1.4 -2684 1i76A 163 3.02e+01 1hfc d.92.1.11 61877 1ujxA 119 3.08e+01 b.26.1.2 -3325 1eceA 358 3.15e+01 1eceA c.1.8.3 28813 1ejxB 101 3.15e+01 b.85.3.1 83183 1lam 484 3.17e+01 1lam c.56.5.3 33829 c.50.1.1 33166 1kg0C 136 3.17e+01 d.169.1.1 72445 1fuxA 166 3.22e+01 1fjjA b.17.1.2 60034 2occF 98 3.23e+01 2occF g.41.5.3 45256 1rzjG 321 3.23e+01 d.172.1.1 -11666 1jsuC 84 3.27e+01 1jsuC j.55.1.1 46339 1c9oA 66 3.33e+01 1mjc b.40.4.5 25325 1f6fB 210 3.35e+01 1axiB b.1.2.1 22033 b.1.2.1 22034 1fjjA 159 3.37e+01 1fjjA b.17.1.2 59852 1i8kB 124 3.45e+01 b.1.1.1 71131 1na3A 91 3.57e+01 k.38.1.1 85481 1rm8A 169 3.57e+01 d.92.1.11 -10584 1ul7A 102 3.57e+01 unknown_sccs -11020 1m98A 317 3.63e+01 a.175.1.1 78866 d.17.4.6 78867 1n0uA 842 3.67e+01 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 1gl4B 98 3.71e+01 b.1.1.4 65288 1g9mG 321 3.80e+01 1gc1G d.172.1.1 42492 1s2dA 167 3.81e+01 c.23.14.1 -6469 1oaqH 121 3.84e+01 b.1.1.1 -2287 1ru3A 732 3.93e+01 e.26.1.3 -12021 1lla 628 3.96e+01 1lla a.85.1.1 18485 a.86.1.1 18496 b.1.18.3 21861