# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1b4pA	217	2.21e+00		a.45.1.1	83158
				c.47.1.5	83159
1na3A	91	2.41e+00		k.38.1.1	85481
1kcxA	518	3.92e+00		b.92.1.3	-5074
				c.1.9.6	-5426
1sddA	306	5.09e+00			
1hdiA	413	5.79e+00	16pk	c.86.1.1	60964
1bkzA	135	6.68e+00	1a3k	b.29.1.3	24202
1nwaA	203	8.03e+00		d.58.28.1	86295
1jqeA	292	9.41e+00		c.66.1.19	71789
1gq8A	319	1.01e+01		b.80.1.5	70350
1sltA	134	1.08e+01	1c1lA	b.29.1.3	24186
1skoA	143	1.08e+01			
1jflA	228	1.38e+01		c.78.2.1	71656
				c.78.2.1	71657
1kxpD	458	1.41e+01		a.126.1.1	73160
				a.126.1.1	73161
				a.126.1.1	73162
1h3fA	432	1.44e+01		c.26.1.1	76631
				d.66.1.4	76632
2eng	210	1.50e+01	2eng	b.52.1.1	26895
1vetA	124	1.52e+01			
1ul7A	102	1.62e+01		unknown_sccs	-11020
1ollA	188	1.62e+01		b.1.1.4	-2690
				b.1.1.4	-2691
1l8fA	207	1.64e+01		b.52.1.1	84537
1mlbA	214	1.76e+01	8fabA	b.1.1.1	20050
				b.1.1.2	21092
1uacL	107	1.82e+01		b.1.1.1	-2138
1je5A	206	1.87e+01	1je5A	b.40.4.7	62909
1nkoA	132	1.90e+01		b.1.1.1	85829
1vhiA	142	1.91e+01	1b3tA	d.58.8.1	39230
1ntyA	311	2.13e+01			
1ckmA	330	2.18e+01	1ckmA	b.40.4.6	25358
				d.142.2.3	41585
1oniA	137	2.27e+01		d.79.1.1	87144
1jsdA	319	2.33e+01		b.19.1.2	63258
2cblA	305	2.40e+01	2cblA	a.39.1.7	17380
				a.48.1.1	17774
				d.93.1.1	40528
3ygsP	97	2.90e+01	3ygsP	a.77.1.3	18435
1f39A	101	3.11e+01	1umuA	b.87.1.1	28386
6gsvA	217	3.15e+01	1b8xA	a.45.1.1	17633
				c.47.1.5	32925
1gzwA	134	3.16e+01		b.29.1.3	-3412
1b3tA	147	3.17e+01	1b3tA	d.58.8.1	39228
1avwB	171	3.19e+01	1wba	b.42.4.1	25599
1jdrA	294	3.23e+01	1ryc	a.93.1.1	62908
1s2dA	167	3.29e+01		c.23.14.1	-6469
1kg0C	136	3.29e+01		d.169.1.1	72445
1p9oA	313	3.29e+01		unknown_sccs	-8423
1o7sA	127	3.32e+01		b.1.1.1	86644
1qwtA	255	3.68e+01		unknown_sccs	-3329
1avaC	181	3.70e+01	1avaC	b.42.4.1	25604
1i1nA	226	3.71e+01		c.66.1.7	71102
1lslA	113	3.86e+01		g.60.1.1	78178
				g.60.1.1	78179