# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jvnA	555	3.55e+00		c.1.2.1	67355
				c.23.16.1	67356
1ckmA	330	4.12e+00	1ckmA	b.40.4.6	25358
				d.142.2.3	41585
1je5A	206	5.59e+00	1je5A	b.40.4.7	62909
1avgI	142	6.84e+00	1avgI	b.60.1.3	27229
1w2wA	211	7.29e+00			
1sltA	134	9.01e+00	1c1lA	b.29.1.3	24186
1pn0A	665	9.58e+00		c.3.1.2	-5992
				c.47.1.10	-7513
				d.16.1.2	-9210
1q8rA	120	9.59e+00		unknown_sccs	-10422
1fohA	664	1.70e+01	1fohA	c.3.1.2	30381
				c.47.1.10	33078
				d.16.1.2	37900
1gd8A	118	1.76e+01		d.188.1.1	60445
1nwaA	203	1.76e+01		d.58.28.1	86295
1cf9A	753	1.83e+01	1cf9A	c.23.16.3	31441
				e.5.1.1	42815
1nszA	347	1.86e+01		b.30.5.4	80724
1lslA	113	1.93e+01		g.60.1.1	78178
				g.60.1.1	78179
2cblA	305	2.09e+01	2cblA	a.39.1.7	17380
				a.48.1.1	17774
				d.93.1.1	40528
3pcgA	200	2.10e+01	3pchA	b.3.6.1	22647
1tkiA	321	2.15e+01	1tkiA	d.144.1.7	41638
1ogaD	215	2.50e+01		b.1.1.1	86990
				b.1.1.2	86991
1esmA	316	2.61e+01	1esmA	c.37.1.6	31953
1ca1	370	2.62e+01	1ca1	a.124.1.1	19340
				b.12.1.3	23648
1s4nA	348	2.66e+01		unknown_sccs	-8262
1p80A	753	2.85e+01		c.23.16.3	-6547
				e.5.1.1	-11840
1j09A	468	3.02e+01		a.97.1.1	77025
				c.26.1.1	77026
1kk1A	410	3.04e+01		b.43.3.1	72634
				b.44.1.1	72635
				c.37.1.8	72636
1m4uA	206	3.39e+01		g.17.1.7	78625
1jqeA	292	3.46e+01		c.66.1.19	71789
1fqtA	112	3.63e+01	1fqtA	b.33.1.1	24441
1obdA	306	3.66e+01		d.143.1.1	86767
2cb5A	453	3.68e+01	3gcb	d.3.1.1	37035
1ap6A	198	3.84e+01	1avmA	a.2.11.1	15746
				d.44.1.1	38705
1n0nA	199	3.92e+01		a.2.11.1	79750
				d.44.1.1	79751
1q15A	503	3.93e+01		c.26.2.1	-6625
				d.153.1.1	-11400