# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1mjfA	281	3.27e+00		c.66.1.17	79198
1w2wA	211	4.04e+00			
1je5A	206	5.43e+00	1je5A	b.40.4.7	62909
1jvnA	555	6.50e+00		c.1.2.1	67355
				c.23.16.1	67356
1fh0A	221	7.94e+00	1cs8A	d.3.1.1	59832
3pcgA	200	8.28e+00	3pchA	b.3.6.1	22647
1j09A	468	9.04e+00		a.97.1.1	77025
				c.26.1.1	77026
1gln	468	9.61e+00	1gln	a.97.1.1	18752
				c.26.1.1	31588
1ea5A	537	9.77e+00	2bce	c.69.1.1	34592
1ckmA	330	9.93e+00	1ckmA	b.40.4.6	25358
				d.142.2.3	41585
1nszA	347	1.09e+01		b.30.5.4	80724
1gd8A	118	1.32e+01		d.188.1.1	60445
1oruA	195	1.51e+01		unknown_sccs	-4390
1avgI	142	1.63e+01	1avgI	b.60.1.3	27229
1esmA	316	1.75e+01	1esmA	c.37.1.6	31953
1tkiA	321	1.96e+01	1tkiA	d.144.1.7	41638
1qtqA	553	2.01e+01	1gtrA	b.53.1.2	26940
				c.26.1.1	31579
1jd0A	263	2.21e+01	2cba	b.74.1.1	62888
1jhfA	202	2.26e+01		a.4.5.2	63057
				b.87.1.1	63058
1nykA	165	2.27e+01		b.33.1.1	86408
1q15A	503	2.37e+01		c.26.2.1	-6625
				d.153.1.1	-11400
1sltA	134	2.50e+01	1c1lA	b.29.1.3	24186
1hdmA	201	2.51e+01	1iakA	b.1.1.2	21583
				d.19.1.1	38157
1lc5A	364	2.53e+01		c.67.1.1	73827
1t9fA	187	2.54e+01			
1p0iA	529	2.57e+01		c.69.1.1	-8291
1nwaA	203	2.70e+01		d.58.28.1	86295
1ewnA	219	2.88e+01	1bnkA	b.46.1.2	25762
1fukA	165	2.89e+01	1fukA	c.37.1.19	32409
830cA	168	2.93e+01	1ck7A	d.92.1.11	40400
1j98A	157	3.00e+01	1j98A	d.185.1.2	62755
1dnlA	199	3.02e+01	1ci0A	b.45.1.1	25753
1s0yA	76	3.08e+01		d.80.1.1	-10434
1p9oA	313	3.21e+01		unknown_sccs	-8423
1fzyA	149	3.26e+01		d.20.1.1	65072
1lv7A	257	3.30e+01		c.37.1.20	78232
1odzA	386	3.34e+01		c.1.8.3	86889
1qr0A	228	3.48e+01	1qr0A	d.150.1.1	59038
				d.150.1.1	59039
1efyA	350	3.60e+01	1a26	a.41.1.1	17413
				d.166.1.2	42275
1bkzA	135	3.62e+01	1a3k	b.29.1.3	24202
1qhlA	227	3.65e+01	1qhlA	c.37.1.12	32382
1shwA	138	3.65e+01			
1o0wA	252	3.68e+01		a.149.1.1	80751
				d.50.1.1	80752
1c44A	123	3.73e+01	1qndA	d.106.1.1	40795
1mjc	69	3.80e+01	1mjc	b.40.4.5	25319