# List of top-scoring protein chains for t04-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i1nA 226 3.85e-01 c.66.1.7 71102 1je5A 206 8.31e-01 1je5A b.40.4.7 62909 1mjfA 281 9.99e-01 c.66.1.17 79198 1nwaA 203 1.27e+00 d.58.28.1 86295 1nszA 347 1.38e+00 b.30.5.4 80724 1lc5A 364 1.44e+00 c.67.1.1 73827 1sddA 306 1.94e+00 1ap6A 198 2.28e+00 1avmA a.2.11.1 15746 d.44.1.1 38705 1na3A 91 2.35e+00 k.38.1.1 85481 1n0nA 199 2.37e+00 a.2.11.1 79750 d.44.1.1 79751 1qwtA 255 2.83e+00 unknown_sccs -3329 1j9yA 385 2.88e+00 1j9yA c.1.8.3 62791 1pl4A 198 3.05e+00 a.2.11.1 -132 d.44.1.1 -9733 1odzA 386 3.08e+00 c.1.8.3 86889 1pmy 123 3.11e+00 1bqk b.6.1.1 22888 1jsdA 319 3.59e+00 b.19.1.2 63258 1w2wA 211 3.84e+00 1ul7A 102 3.93e+00 unknown_sccs -11020 1jeyA 609 4.04e+00 1jeqA unknown_sccs -4426 unknown_sccs -7990 1oruA 195 4.67e+00 unknown_sccs -4390 1ru3A 732 5.40e+00 e.26.1.3 -12021 1s0yA 76 5.52e+00 d.80.1.1 -10434 2fha 183 5.56e+00 2fha a.25.1.1 16674 1gl4B 98 5.62e+00 b.1.1.4 65288 1gd8A 118 6.32e+00 d.188.1.1 60445 1pba 81 6.43e+00 1pytA d.58.3.1 39067 1bj4A 470 6.69e+00 1bj4A c.67.1.4 34479 1jqeA 292 6.82e+00 c.66.1.19 71789 1fna 93 6.88e+00 1fnf b.1.2.1 21971 1m98A 317 7.18e+00 a.175.1.1 78866 d.17.4.6 78867 1o5uA 101 7.35e+00 b.82.1.8 -4845 1kutA 230 7.53e+00 d.143.1.1 73017 1avgI 142 7.72e+00 1avgI b.60.1.3 27229 1e9lA 377 8.28e+00 1e9lA c.1.8.5 59395 d.26.3.1 59396 1mjc 69 8.45e+00 1mjc b.40.4.5 25319 1v5sA 126 8.71e+00 2eifA 136 8.84e+00 1bkb b.34.5.2 24607 b.40.4.5 25339 1nkqA 259 9.31e+00 1fuxA 166 9.34e+00 1fjjA b.17.1.2 60034 1ogaD 215 9.44e+00 b.1.1.1 86990 b.1.1.2 86991 1pjr 724 9.45e+00 1pjr c.37.1.19 32391 c.37.1.19 32392 1rhfA 182 9.46e+00 b.1.1.1 -2335 b.1.1.4 -2684 1qhlA 227 1.05e+01 1qhlA c.37.1.12 32382 1qr0A 228 1.06e+01 1qr0A d.150.1.1 59038 d.150.1.1 59039 1dgwA 178 1.06e+01 1dgwA b.82.1.2 28090 1ek1A 554 1.10e+01 1cr6B c.108.1.2 43335 c.69.1.11 34685 1c5cH 215 1.16e+01 1igtB b.1.1.1 20475 b.1.1.2 21439 1r94A 118 1.17e+01 b.124.1.1 -4402 1dptA 117 1.18e+01 1dptA d.80.1.3 39862 1sltA 134 1.20e+01 1c1lA b.29.1.3 24186 1uunA 184 1.25e+01 unknown_sccs -12370 1ix9A 205 1.26e+01 a.2.11.1 76899 d.44.1.1 76900 1avaC 181 1.33e+01 1avaC b.42.4.1 25604 1hufA 140 1.36e+01 1hufA d.195.1.1 61272 1i0hA 205 1.42e+01 1avmA a.2.11.1 15760 d.44.1.1 38685 1iyhA 198 1.45e+01 a.45.1.1 83790 c.47.1.5 83791 1uwwA 191 1.54e+01 1koe 172 1.67e+01 1koe d.169.1.5 42448 1a6wH 120 1.68e+01 1mfa b.1.1.1 20253 1pmi 440 1.72e+01 1pmi b.82.1.3 28114 1mvuB 121 1.74e+01 b.1.1.1 -2250 1o0wA 252 1.79e+01 a.149.1.1 80751 d.50.1.1 80752 1mfa 247 1.85e+01 1mfa b.1.1.1 19888 b.1.1.1 19889 1hfuA 503 1.86e+01 b.6.1.3 65827 b.6.1.3 65828 b.6.1.3 65829 1s4nA 348 1.95e+01 unknown_sccs -8262 1ejrB 101 2.00e+01 1ubpB b.85.3.1 28320 1eceA 358 2.01e+01 1eceA c.1.8.3 28813 1miuA 738 2.27e+01 a.170.1.1 79153 a.171.1.1 79154 b.40.4.3 79155 b.40.4.3 79156 b.40.4.3 79157 1dnlA 199 2.31e+01 1ci0A b.45.1.1 25753 1r6xA 395 2.33e+01 b.122.1.3 -5125 c.26.1.5 -6620 1ve9A 347 2.33e+01 c.4.1.2 -6056 d.16.1.3 -9214 1m55A 197 2.33e+01 d.89.1.3 74469 1ltlA 279 2.37e+01 b.40.4.11 84701 1t9fA 187 2.43e+01 1ejxB 101 2.46e+01 b.85.3.1 83183 1m2rA 327 2.59e+01 d.144.1.7 84760 1dseA 292 2.66e+01 1ryc a.93.1.1 59130 1nlbH 218 2.67e+01 b.1.1.1 80621 b.1.1.2 80622 1j05B 121 2.68e+01 b.1.1.1 -2251 1a65A 504 2.79e+01 1a65A b.6.1.3 23148 b.6.1.3 23149 b.6.1.3 23150 2cb5A 453 2.86e+01 3gcb d.3.1.1 37035 2plt 98 2.89e+01 1plc b.6.1.1 22862 1wejH 223 2.95e+01 1igtB b.1.1.1 20361 b.1.1.2 21353 1k7hA 476 3.02e+01 c.76.1.1 72101 1qg3A 195 3.02e+01 1qg3A b.1.2.1 21993 b.1.2.1 21994 1j09A 468 3.05e+01 a.97.1.1 77025 c.26.1.1 77026 1c44A 123 3.05e+01 1qndA d.106.1.1 40795 1esmA 316 3.10e+01 1esmA c.37.1.6 31953 1iznB 277 3.10e+01 e.43.1.2 83848 1uuzA 137 3.16e+01 d.233.1.1 -9478 1bxoA 323 3.17e+01 2er7E b.50.1.2 26805 1gdeA 389 3.20e+01 c.67.1.1 60456 1gln 468 3.20e+01 1gln a.97.1.1 18752 c.26.1.1 31588 1nksA 194 3.27e+01 1nksA c.37.1.1 31886 1p4cA 380 3.28e+01 c.1.4.1 -5201 1j9lA 247 3.30e+01 c.106.1.1 62762 1s2dA 167 3.38e+01 c.23.14.1 -6469 1g9oA 91 3.45e+01 1pdr b.36.1.1 60400 1h5wA 309 3.57e+01 e.27.1.1 65635 1rg9A 383 3.63e+01 d.130.1.1 -11057 d.130.1.1 -11058 d.130.1.1 -11059 1jdrA 294 3.64e+01 1ryc a.93.1.1 62908 1h4lD 147 3.68e+01 a.74.1.1 70873 1hkeA 137 3.72e+01 1i8kA 107 3.78e+01 b.1.1.1 71130 1auiB 169 3.79e+01 1auiB a.39.1.5 17325 1lla 628 3.79e+01 1lla a.85.1.1 18485 a.86.1.1 18496 b.1.18.3 21861 1jsuC 84 3.82e+01 1jsuC j.55.1.1 46339 1ic9A 29 3.82e+01 k.26.1.1 62261 1tfr 305 3.83e+01 1tfr a.60.7.1 18081 c.120.1.2 33351 1hyxH 224 3.83e+01 1igtB b.1.1.1 20167 b.1.1.2 21191 1h3fA 432 3.90e+01 c.26.1.1 76631 d.66.1.4 76632 1gnxA 479 3.98e+01 c.1.8.4 76241