# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1lslA	113	1.36e+00		g.60.1.1	78178
				g.60.1.1	78179
1skoA	143	1.63e+00			
1gq8A	319	3.13e+00		b.80.1.5	70350
2cblA	305	3.89e+00	2cblA	a.39.1.7	17380
				a.48.1.1	17774
				d.93.1.1	40528
1vetA	124	4.14e+00			
1jqeA	292	4.74e+00		c.66.1.19	71789
8pchA	220	4.80e+00	1cs8A		
1iwmA	186	5.87e+00		b.125.1.2	83758
1nwaA	203	6.65e+00		d.58.28.1	86295
1sddA	306	6.90e+00			
1nkoA	132	7.15e+00		b.1.1.1	85829
4bcl	366	8.42e+00	4bcl	b.75.1.1	27968
1na3A	91	8.88e+00		k.38.1.1	85481
1p9oA	313	9.64e+00		unknown_sccs	-8423
1kg0C	136	1.02e+01		d.169.1.1	72445
1jsdA	319	1.26e+01		b.19.1.2	63258
1avaC	181	1.47e+01	1avaC	b.42.4.1	25604
1ejrB	101	1.87e+01	1ubpB	b.85.3.1	28320
1pjr	724	1.89e+01	1pjr	c.37.1.19	32391
				c.37.1.19	32392
1ejxB	101	1.94e+01		b.85.3.1	83183
1omwA	689	2.06e+01		a.91.1.1	87086
				b.55.1.1	87087
				d.144.1.7	87088
1rocA	155	2.33e+01		unknown_sccs	-2866
1avgI	142	2.58e+01	1avgI	b.60.1.3	27229
1n0lA	224	2.58e+01		b.1.11.1	79744
				b.7.2.1	79745
1iw4A	55	2.60e+01		unknown_sccs	71469
1fqtA	112	2.61e+01	1fqtA	b.33.1.1	24441
1je5A	206	2.70e+01	1je5A	b.40.4.7	62909
7ahlA	293	2.77e+01	7ahlA	f.6.1.1	43812
1eceA	358	3.12e+01	1eceA	c.1.8.3	28813
1ja9A	274	3.19e+01		c.2.1.2	62817
1kcxA	518	3.38e+01		b.92.1.3	-5074
				c.1.9.6	-5426
1i1nA	226	3.47e+01		c.66.1.7	71102
2eng	210	3.90e+01	2eng	b.52.1.1	26895
1ollA	188	3.97e+01		b.1.1.4	-2690
				b.1.1.4	-2691