CreatePredAlphaCost pred_alpha2k alpha11 T0271.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0271.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 15 near_backbone 3 way_back 3 dry5 10 dry6.5 25 dry8 10 dry12 5 \
	phobic_fit 2 \
	sidechain 3 \
	bystroff 5 \
	soft_clashes 30  backbone_clashes 2 \
	break 70  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	constraints 5 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

# from T0271.t04.dssp-ehl2.constraints
HelixConstraint 	V27	T36	0.7572
HelixConstraint 	E63	N75	0.7365
HelixConstraint 	N94	K100	0.6168
HelixConstraint 	E144	L157	0.6201

StrandConstraint	L3	P7	0.7414
StrandConstraint	V16	L18	0.8247
StrandConstraint	F43	F47	0.6133
StrandConstraint	V56	R57	0.6274
StrandConstraint	V81	V85	0.7274
StrandConstraint	R107	A110	0.6249
StrandConstraint	K117	E122	0.6568
StrandConstraint	A128	M133	0.6561



# from decoys/try1-opt2.sheets
SheetConstraint K4 I8   	V120 L116  	hbond K4
SheetConstraint L14 A21  	G87 H80  	hbond N15
SheetConstraint N15 G19  	A113 Y109  	hbond V16
SheetConstraint I17 H22  	A110 V105  	hbond Q20
SheetConstraint R42 S48  	G87 V81  	hbond G44
SheetConstraint F43 E49  	T61 L55  	hbond L45
SheetConstraint P115 V119  	G135 G131  	hbond K117
SheetConstraint V119 E123  	L130 Q126  	hbond A121