Best Alignments for T0271

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1rlhA/T0271-1rlhA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1rlhA/T0271-1rlhA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.4306e-261.9309e-35 unknown_sccs
1gp6A/T0271-1gp6A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1gp6A/T0271-1gp6A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 3.3194e+011.9192e+01 b.82.2.1
1p2cA/T0271-1p2cA-t04-global-adpstyle1.a2m 1p2cA/T0271-1p2cA-t04-global-adpstyle1.al 3.4295e+011.1786e+01 b.1.1.2
b.1.1.1
1dj3A/1adeA-T0271-fssp-local-adpstyle5.a2m 1dj3A/1adeA-T0271-fssp-local-adpstyle5.al 3.8998e+019.9397e+00 1adeA c.37.1.10
1pskL/8fabA-T0271-fssp-local-adpstyle5.a2m 1pskL/8fabA-T0271-fssp-local-adpstyle5.al 4.0494e+015.9922e+00 8fabA b.1.1.2
b.1.1.1
1ovmA/T0271-1ovmA-t04-local-adpstyle1.a2m 1ovmA/T0271-1ovmA-t04-local-adpstyle1.al 4.1546e+014.0022e+01 c.36.1.5
c.36.1.9
c.31.1.3
1gp4A/T0271-1gp4A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1gp4A/T0271-1gp4A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 4.2688e+012.1328e+01 b.82.2.1
1aotF/1lckA-T0271-fssp-local-adpstyle5.a2m 1aotF/1lckA-T0271-fssp-local-adpstyle5.al 4.3865e+016.5202e+00 1lckA d.93.1.1
1e9iA/T0271-1e9iA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1e9iA/T0271-1e9iA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 4.4642e+011.4943e+01 d.54.1.1
c.1.11.1
1m3uA/T0271-1m3uA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1m3uA/T0271-1m3uA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 4.6348e+015.8583e+00 c.1.12.8

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001