# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rlhA 173 2.45e-23 unknown_sccs -10786 1vhmA 195 1.61e+00 d.110.2.1 -10828 1m3uA 264 2.50e+00 c.1.12.8 84784 1gp4A 356 2.83e+00 b.82.2.1 65439 1gp6A 356 2.84e+00 b.82.2.1 65441 1qdlA 422 2.94e+00 1qdlA d.161.1.1 42088 1ttzA 87 3.24e+00 1cjaA 342 3.39e+00 1cjaA d.144.1.3 41708 1q0pA 223 3.42e+00 c.62.1.1 -7979 1sgoA 139 3.52e+00 unknown_sccs -10487 1q52A 314 7.68e+00 c.14.1.3 -6246 1h6kZ 98 1.11e+01 d.58.7.1 60686 1qsoA 149 1.34e+01 1qsmA d.108.1.1 40812 1tljA 213 1.39e+01 1h6kX 97 1.40e+01 d.58.7.1 60684 1j79A 347 1.49e+01 1j79A c.1.9.4 62675 1efvA 315 1.63e+01 1efvA c.26.2.3 31633 c.31.1.2 31728 1rj9A 304 1.65e+01 a.24.13.1 -631 c.37.1.10 -7129 1air 353 1.66e+01 1air b.80.1.1 28018 1o88A 353 1.66e+01 b.80.1.1 81178 1nf5B 286 1.72e+01 c.68.1.2 80454 1nmmB 286 1.73e+01 c.68.1.2 80662 1pztA 286 1.73e+01 c.68.1.2 -8213 2pec 353 1.84e+01 1air b.80.1.1 28019 2cmd 312 1.86e+01 2cmd c.2.1.5 30135 d.162.1.1 42102 1l6wA 220 1.94e+01 c.1.10.1 73632 1twdA 256 2.11e+01 1lucA 355 2.16e+01 1lucA c.1.16.1 29547 1brlA 355 2.22e+01 1lucA c.1.16.1 29553 1ewqA 765 2.30e+01 1ewqA a.113.1.1 19069 c.37.1.12 32383 c.55.6.1 33740 d.75.2.1 39743 1j8wB 273 2.50e+01 1jn8B 273 2.52e+01 1ujnA 348 2.63e+01 e.22.1.1 -11998 1fgxA 288 2.72e+01 1fgxA c.68.1.2 34508 1lvwA 295 2.80e+01 c.68.1.6 84723 1gg1A 350 2.81e+01 1qr7A c.1.10.4 29187 1g2qA 187 2.86e+01 c.61.1.1 65117 1iqpA 327 2.86e+01 a.80.1.1 62649 c.37.1.20 62650 1ej0A 180 2.87e+01 1ej0A c.66.1.2 34179 1hyeA 313 2.95e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1ubpB 122 2.99e+01 1ubpB b.85.3.1 28346 1oi7A 288 2.99e+01 c.2.1.8 87049 c.23.4.1 87050 4ubpB 126 3.05e+01 1ubpB b.85.3.1 28345 1ako 268 3.29e+01 1ako d.151.1.1 41779 1e2uA 553 3.29e+01 1e1dA e.26.1.1 43362 1gntA 553 3.29e+01 e.26.1.1 70290 1gthC 1025 3.34e+01 a.1.2.2 70493 c.1.4.1 70494 c.3.1.1 70495 c.4.1.1 70496 d.58.1.5 70497 1b4eA 323 3.34e+01 1b4kA c.1.10.3 29186 1i8jA 323 3.43e+01 1b4kA c.1.10.3 61968 1l6sA 323 3.44e+01 c.1.10.3 73627 1hm9A 468 3.48e+01 b.81.1.4 65866 c.68.1.5 65867 1qr7A 350 3.56e+01 1qr7A c.1.10.4 29191 1jg1A 235 3.62e+01 c.66.1.7 66661 1mjnA 179 3.67e+01 c.62.1.1 79210 1gthA 1025 3.71e+01 a.1.2.2 70483 c.1.4.1 70484 c.3.1.1 70485 c.4.1.1 70486 d.58.1.5 70487 1fc4A 401 3.76e+01 1bs0A c.67.1.4 59760 1m6eX 359 3.77e+01 unknown_sccs -8071 1lkzA 219 3.88e+01 unknown_sccs 73991 d.58.40.1 73992 1h2vZ 156 3.89e+01 d.58.7.1 76595 1lc5A 364 3.91e+01 c.67.1.1 73827 1o8bA 219 3.92e+01 unknown_sccs 81180 d.58.40.1 81181 6pfkA 319 3.95e+01 3pfk c.89.1.1 35583 1a7aA 432 3.96e+01 1b3rA c.2.1.4 30104 c.23.12.3 31364 1lkcA 364 3.97e+01 c.67.1.1 73978 1h7wA 1025 3.98e+01 1h7wA a.1.2.2 15683 c.1.4.1 28628 c.3.1.1 30324 c.4.1.1 30609 d.58.1.5 39007