# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rlhA 173 9.28e-25 unknown_sccs -10786 1ttzA 87 1.27e+00 1vhmA 195 2.18e+00 d.110.2.1 -10828 2cmd 312 2.80e+00 2cmd c.2.1.5 30135 d.162.1.1 42102 1e55A 512 2.99e+00 1e70M c.1.8.4 28934 1q52A 314 3.01e+00 c.14.1.3 -6246 1m3uA 264 3.09e+00 c.1.12.8 84784 2pec 353 3.14e+00 1air b.80.1.1 28019 1h49A 512 3.29e+00 c.1.8.4 83477 1gp6A 356 3.46e+00 b.82.2.1 65441 1nf5B 286 3.57e+00 c.68.1.2 80454 1g2qA 187 3.64e+00 c.61.1.1 65117 1nmmB 286 3.78e+00 c.68.1.2 80662 1pztA 286 3.83e+00 c.68.1.2 -8213 1e2uA 553 4.01e+00 1e1dA e.26.1.1 43362 1fgxA 288 4.07e+00 1fgxA c.68.1.2 34508 1gntA 553 4.08e+00 e.26.1.1 70290 1gp4A 356 4.12e+00 b.82.2.1 65439 1jn8B 273 4.16e+00 1o88A 353 4.17e+00 b.80.1.1 81178 1l6wA 220 4.24e+00 c.1.10.1 73632 1qdlA 422 4.52e+00 1qdlA d.161.1.1 42088 1j8wB 273 5.06e+00 1sgoA 139 5.18e+00 unknown_sccs -10487 1e1dA 553 5.23e+00 1e1dA e.26.1.1 43363 1skyB 502 5.50e+00 1skyB a.69.1.1 18313 b.49.1.1 26478 c.37.1.11 32358 1air 353 5.60e+00 1air b.80.1.1 28018 1q0pA 223 5.74e+00 c.62.1.1 -7979 1tljA 213 6.89e+00 1rcqA 357 7.98e+00 1id0A 152 8.78e+00 d.122.1.3 66111 1uahA 431 8.81e+00 1ug6A 431 8.81e+00 c.1.8.4 88490 1eu8A 409 8.87e+00 1eu8A c.94.1.1 59502 6pfkA 319 9.58e+00 3pfk c.89.1.1 35583 1q1lA 401 9.76e+00 unknown_sccs -11166 4pfk 319 9.80e+00 3pfk c.89.1.1 35582 1ewqA 765 1.16e+01 1ewqA a.113.1.1 19069 c.37.1.12 32383 c.55.6.1 33740 d.75.2.1 39743 1l9wA 252 1.17e+01 c.1.10.1 84570 1gg1A 350 1.19e+01 1qr7A c.1.10.4 29187 1n8fA 350 1.22e+01 c.1.10.4 85397 1jg1A 235 1.23e+01 c.66.1.7 66661 1j79A 347 1.25e+01 1j79A c.1.9.4 62675 1b4eA 323 1.27e+01 1b4kA c.1.10.3 29186 1l6sA 323 1.29e+01 c.1.10.3 73627 3pfk 319 1.37e+01 3pfk c.89.1.1 35581 1n35A 1267 1.40e+01 e.8.1.4 79935 1nv8A 284 1.44e+01 c.66.1.30 86224 1o8bA 219 1.45e+01 unknown_sccs 81180 d.58.40.1 81181 1twdA 256 1.50e+01 1iqpA 327 1.50e+01 a.80.1.1 62649 c.37.1.20 62650 1qfeA 252 1.53e+01 1qfeA c.1.10.1 29167 1odkA 235 1.60e+01 c.56.2.1 86863 1dv2A 452 1.61e+01 1bncA b.84.2.1 28238 c.30.1.1 31645 d.142.1.2 41490 1ks2A 219 1.62e+01 unknown_sccs 72908 d.58.40.1 72909 1qr7A 350 1.63e+01 1qr7A c.1.10.4 29191 1zid 268 1.69e+01 1eny c.2.1.2 29911 1lkzA 219 1.72e+01 unknown_sccs 73991 d.58.40.1 73992 1i8jA 323 1.72e+01 1b4kA c.1.10.3 61968 1oi7A 288 1.77e+01 c.2.1.8 87049 c.23.4.1 87050 1cjaA 342 1.79e+01 1cjaA d.144.1.3 41708 1gnxA 479 1.81e+01 c.1.8.4 76241 1uiuA 502 1.86e+01 c.94.1.1 -8674 1bxsA 501 1.86e+01 1bpwA c.82.1.1 35357 1fc4A 401 1.89e+01 1bs0A c.67.1.4 59760 1mw7A 240 1.93e+01 e.39.1.1 79557 1vkfA 188 1.95e+01 1gqnA 252 2.00e+01 c.1.10.1 -5494 1s72E 178 2.00e+01 1ej0A 180 2.06e+01 1ej0A c.66.1.2 34179 1r85A 379 2.08e+01 1ugmA 125 2.09e+01 1oeyJ 107 2.19e+01 d.15.2.2 -9168 1scuA 288 2.22e+01 2scuA c.2.1.8 30307 c.23.4.1 31135 1efvA 315 2.26e+01 1efvA c.26.2.3 31633 c.31.1.2 31728 1ea0A 1479 2.26e+01 b.80.4.1 64854 c.1.4.1 64855 d.153.1.1 64856 1vig 71 2.31e+01 1vih d.51.1.1 38806 1o4vA 183 2.40e+01 c.23.8.1 86628 1qorA 327 2.42e+01 1qorA b.35.1.2 24766 c.2.1.1 29782 1hyeA 313 2.43e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1a0i 348 2.57e+01 1a0i b.40.4.6 25363 d.142.2.1 41577 1exnB 290 2.58e+01 1exnA a.60.7.1 18089 c.120.1.2 33359 1i1qA 520 2.67e+01 1qdlA d.161.1.1 61543 1bd3A 243 2.71e+01 1bd3A c.61.1.1 34098 1gqyA 475 2.75e+01 c.5.1.1 83305 c.59.1.1 83306 c.72.2.1 83307 1tz9A 367 2.77e+01 1cvrA 435 2.77e+01 1cvrA b.1.18.12 21949 c.17.1.2 31006 1ixlA 131 2.78e+01 d.38.1.5 -9705 1vknA 351 2.88e+01 1dl5A 317 2.94e+01 1dl5A c.66.1.7 64720 d.197.1.1 64721 1d2sA 170 2.96e+01 1d2sA b.29.1.4 24221 1mzhA 225 2.97e+01 c.1.10.1 79698 1vih 71 2.98e+01 1vih d.51.1.1 38807 1jj2E 177 3.03e+01 1ffk1 d.141.1.1 63089 d.141.1.1 63090 1j90A 230 3.04e+01 c.37.1.1 66448 2plc 274 3.12e+01 2plc c.1.18.2 29614 1j3mA 129 3.13e+01 1f5fA 205 3.13e+01 1d2sA b.29.1.4 24222 1v1rA 400 3.15e+01 1f0yA 302 3.17e+01 2hdhA a.100.1.3 18793 c.2.1.6 30197 1egr 85 3.17e+01 1kte c.47.1.1 32765 8rucA 475 3.23e+01 1burA c.1.14.1 29339 d.58.9.1 39245 1egwA 77 3.28e+01 1mnmA d.88.1.1 40234 1kdkA 177 3.29e+01 b.29.1.4 72351 1fxzA 476 3.33e+01 b.82.1.2 65059 b.82.1.2 65060 4ubpB 126 3.34e+01 1ubpB b.85.3.1 28345 2scuA 288 3.35e+01 2scuA c.2.1.8 30303 c.23.4.1 31131 1ir6A 424 3.35e+01 c.107.1.2 71342 1brlA 355 3.35e+01 1lucA c.1.16.1 29553 1mjnA 179 3.45e+01 c.62.1.1 79210 1ubpB 122 3.52e+01 1ubpB b.85.3.1 28346 1b3rA 431 3.56e+01 1b3rA c.2.1.4 30106 c.23.12.3 31366 1mukA 1267 3.60e+01 e.8.1.4 79492 1hl8A 449 3.63e+01 unknown_sccs -4690 unknown_sccs -5361 1qsoA 149 3.64e+01 1qsmA d.108.1.1 40812 1i7qA 519 3.65e+01 1qdlA d.161.1.1 61901 1d4fA 431 3.74e+01 1b3rA c.2.1.4 30110 c.23.12.3 31370 1e3mA 800 3.77e+01 1ewqA a.113.1.1 19075 c.37.1.12 32389 c.55.6.1 33746 d.75.2.1 39747 1i9yA 347 3.79e+01 1i9yA d.151.1.2 62101 1i52A 236 3.85e+01 1i52A c.68.1.13 61767 1ro0A 216 3.88e+01 unknown_sccs -11390 2cevA 299 3.89e+01 1d3vA c.42.1.1 32576 1vjeA 166 3.90e+01 d.185.1.2 -10261 1i9zA 347 3.90e+01 1i9yA d.151.1.2 62102 1p3dA 475 3.91e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1v02A 565 3.92e+01 1qsmA 152 3.96e+01 1qsmA d.108.1.1 40808 1ht6A 405 3.98e+01 b.71.1.1 83629 c.1.8.1 83630 1e5dA 402 4.00e+01 1e5dA c.23.5.1 31208 d.157.1.3 42061 1kqzA 273 4.00e+01 c.1.8.5 68844