# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1rlhA	173	6.53e-22		unknown_sccs	-10786
1rmg	422	3.30e+00	1rmg	b.80.1.3	28029
1m41A	380	7.72e+00		c.1.16.4	78595
1ozhA	566	7.79e+00		c.31.1.3	-6737
				c.36.1.5	-6895
				c.36.1.9	-6935
1jp4A	308	8.09e+00	1jp4A	e.7.1.1	63223
1fvgA	199	9.12e+00	1fvaA	d.58.28.1	39408
3pbgA	468	1.14e+01	1e70M	c.1.8.4	28951
1e8cA	498	1.33e+01		c.98.1.1	59377
				c.59.1.1	59378
				c.72.2.1	59379
1ikpA	613	1.40e+01		b.29.1.7	66182
				d.166.1.1	66183
				f.1.5.1	66184
1hm2A	700	1.43e+01	1cb8A	a.102.3.2	61083
				b.24.1.1	61084
				b.30.5.2	61085
1nqkA	381	1.50e+01		c.1.16.4	-5607
1mpp	361	1.51e+01	2rmpA	b.50.1.2	26856
1cb8A	678	1.54e+01	1cb8A	a.102.3.2	18849
				b.24.1.1	23898
				b.30.5.2	24422
1pbgA	468	1.56e+01	1e70M	c.1.8.4	28946
1oyb	400	1.65e+01	1oyc	c.1.4.1	28602
1oyc	400	1.87e+01	1oyc	c.1.4.1	28603
1oya	400	2.07e+01	1oyc	c.1.4.1	28604
1qmzB	259	2.27e+01	1vin	a.74.1.1	18338
				a.74.1.1	18339
2scuA	288	2.36e+01	2scuA	c.2.1.8	30303
				c.23.4.1	31131
1vheA	373	2.56e+01		unknown_sccs	-4280
				c.56.5.4	-7890
1mpb	370	2.62e+01	4mbp	c.94.1.1	35780
1e8uA	454	2.74e+01	1e8tA	b.68.1.1	59389
1scuA	288	2.84e+01	2scuA	c.2.1.8	30307
				c.23.4.1	31135
1gjwA	637	2.99e+01		b.71.1.1	60582
				c.1.8.1	60583
1bl1	31	3.28e+01	1bl1	j.15.1.1	46154
1usrA	454	3.34e+01		b.68.1.1	-4569
1a53	247	3.51e+01	1a53	c.1.2.4	28564
1e8tA	454	3.51e+01	1e8tA	b.68.1.1	59387
1f1sA	814	3.67e+01		a.102.3.2	64928
				b.1.18.2	64929
				b.24.1.1	64930
				b.30.5.2	64931
1m7xA	617	3.82e+01		b.1.18.2	78749
				b.71.1.1	78750
				c.1.8.1	78751
1hm9A	468	3.91e+01		b.81.1.4	65866
				c.68.1.5	65867
1brlA	355	3.99e+01	1lucA	c.1.16.1	29553
1q2bA	434	4.00e+01		b.29.1.10	-3469