# List of top-scoring protein chains for T0271.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rlhA 173 3.94e-30 unknown_sccs -10786 7pcy 98 7.75e+00 1plc b.6.1.1 22863 1mszA 86 1.02e+01 d.68.7.1 79428 1p2cA 212 1.02e+01 b.1.1.1 -2130 b.1.1.2 -2380 1gp6A 356 1.07e+01 b.82.2.1 65441 1ovmA 552 1.11e+01 c.31.1.3 87461 c.36.1.5 87462 c.36.1.9 87463 1dj3A 442 1.21e+01 1adeA c.37.1.10 32239 1pskL 213 1.28e+01 8fabA b.1.1.1 20138 b.1.1.2 21168 1o8bA 219 1.32e+01 unknown_sccs 81180 d.58.40.1 81181 1aotF 106 1.34e+01 1lckA d.93.1.1 40458 1ufgA 151 1.41e+01 1nrkA 328 1.44e+01 unknown_sccs -4071 unknown_sccs -10176 1ttzA 87 1.70e+01 1g83A 165 1.71e+01 1fmk b.34.2.1 60341 d.93.1.1 60342 1j7dA 145 1.74e+01 1jatB d.20.1.1 62680 1jtsA 167 1.77e+01 a.25.1.1 84206 1ff9A 450 1.81e+01 1ff9A c.2.1.3 30039 d.81.1.2 39954 1qmyA 167 1.93e+01 1qmyA d.3.1.2 37094 1i4vA 115 1.95e+01 1umuA b.87.1.1 61734 1umuA 116 1.96e+01 1umuA b.87.1.1 28382 1lox 662 2.21e+01 1lox a.119.1.2 19238 b.12.1.1 23638 1al3 324 2.27e+01 1al3 c.94.1.1 35835 1ay9A 108 2.36e+01 1umuA b.87.1.1 28384 1cicA 214 2.54e+01 8fabA b.1.1.1 19964 b.1.1.2 21024 1yecL 219 2.56e+01 8fabA b.1.1.1 20144 b.1.1.2 21174 1bm3L 214 2.63e+01 8fabA b.1.1.1 20066 b.1.1.2 21098 1fujA 221 2.69e+01 1a7s b.47.1.2 26349 1ikqA 613 2.69e+01 b.29.1.7 66185 d.166.1.1 66186 f.1.5.1 66187 1ikpA 613 2.71e+01 b.29.1.7 66182 d.166.1.1 66183 f.1.5.1 66184 1iaiL 214 2.75e+01 8fabA b.1.1.1 20072 b.1.1.2 21104 1lci 550 2.81e+01 1lci e.23.1.1 43349 1iuz 98 2.82e+01 1plc b.6.1.1 22861 1mr8A 93 2.85e+01 1b4cA a.39.1.2 17186 1uvqB 198 2.92e+01 b.1.1.2 -2659 d.19.1.1 -9348 1e42A 258 2.99e+01 1e42A b.1.10.1 22316 d.105.1.1 40792 1neeA 138 3.01e+01 unknown_sccs -9002 g.59.1.1 -12824 1ehs 48 3.09e+01 1ehs g.2.1.1 43998 1iqpA 327 3.21e+01 a.80.1.1 62649 c.37.1.20 62650 1kb5L 214 3.29e+01 8fabA b.1.1.1 20228 b.1.1.2 21240 1e4xL 214 3.35e+01 32c2A b.1.1.1 59240 b.1.1.2 59241 1vig 71 3.47e+01 1vih d.51.1.1 38806