# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1rlhA	173	1.07e-29		unknown_sccs	-10786
2cmd	312	3.90e-01	2cmd	c.2.1.5	30135
				d.162.1.1	42102
1vhmA	195	1.08e+00		d.110.2.1	-10828
1hm9A	468	2.67e+00		b.81.1.4	65866
				c.68.1.5	65867
1ttzA	87	2.69e+00			
1sgoA	139	2.90e+00		unknown_sccs	-10487
1ej0A	180	3.30e+00	1ej0A	c.66.1.2	34179
1gp6A	356	3.61e+00		b.82.2.1	65441
1m3uA	264	4.03e+00		c.1.12.8	84784
1q52A	314	5.26e+00		c.14.1.3	-6246
1g2qA	187	5.41e+00		c.61.1.1	65117
1h7wA	1025	6.31e+00	1h7wA	a.1.2.2	15683
				c.1.4.1	28628
				c.3.1.1	30324
				c.4.1.1	30609
				d.58.1.5	39007
1gteA	1025	6.53e+00		a.1.2.2	70440
				c.1.4.1	70441
				c.3.1.1	70442
				c.4.1.1	70443
				d.58.1.5	70444
1g97A	459	6.97e+00	1fwyA	b.81.1.4	60394
				c.68.1.5	60395
1efvA	315	7.00e+00	1efvA	c.26.2.3	31633
				c.31.1.2	31728
1ako	268	7.36e+00	1ako	d.151.1.1	41779
1l6wA	220	9.05e+00		c.1.10.1	73632
1o88A	353	9.07e+00		b.80.1.1	81178
1tikA	213	9.26e+00			
1q7zA	566	1.06e+01		c.1.21.2	-5638
				c.1.26.1	-5666
1n8fA	350	1.07e+01		c.1.10.4	85397
1gg1A	350	1.07e+01	1qr7A	c.1.10.4	29187
1nvmA	345	1.08e+01		a.5.7.1	86249
				c.1.10.5	86250
1air	353	1.20e+01	1air	b.80.1.1	28018
1qsoA	149	1.44e+01	1qsmA	d.108.1.1	40812
1tz9A	367	1.52e+01			
1tljA	213	1.60e+01			
1hyeA	313	1.62e+01	2cmd	c.2.1.5	61400
				d.162.1.1	61401
1lucA	355	1.73e+01	1lucA	c.1.16.1	29547
1pztA	286	1.77e+01		c.68.1.2	-8213
1oeyJ	107	1.78e+01		d.15.2.2	-9168
1n9lA	109	1.87e+01		d.110.3.6	85468
1rj9A	304	1.88e+01		a.24.13.1	-631
				c.37.1.10	-7129
1mldA	314	1.98e+01	2cmd	c.2.1.5	30122
				d.162.1.1	42089
1qsmA	152	2.00e+01	1qsmA	d.108.1.1	40808
1l6sA	323	2.11e+01		c.1.10.3	73627
1fgxA	288	2.12e+01	1fgxA	c.68.1.2	34508
1fc4A	401	2.23e+01	1bs0A	c.67.1.4	59760
1l2lA	457	2.38e+01		c.72.1.3	77656
1i8jA	323	2.42e+01	1b4kA	c.1.10.3	61968
1nmmB	286	2.45e+01		c.68.1.2	80662
1oz9A	150	2.54e+01		unknown_sccs	-10588
1j79A	347	2.54e+01	1j79A	c.1.9.4	62675
1fp2A	352	2.86e+01	1fpxA	a.4.5.29	59941
				c.66.1.12	59942
1oc7A	364	2.88e+01		c.6.1.1	86794
2bvwA	362	2.96e+01	1bvwA	c.6.1.1	30666
1m1nB	522	3.01e+01		c.92.2.3	78418
1ghhA	81	3.03e+01	1ghhA	d.57.1.1	38940
1kfwA	435	3.27e+01		c.1.8.5	77376
				d.26.3.1	77377
1skoA	143	3.30e+01			
1v84A	253	3.51e+01			
1u08A	386	3.75e+01			
1pyfA	312	3.88e+01		c.1.7.1	-5251
1f0yA	302	3.96e+01	2hdhA	a.100.1.3	18793
				c.2.1.6	30197
1jnuA	104	3.99e+01		d.110.3.6	71762