# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rlhA 173 1.48e-32 unknown_sccs -10786 1jclA 260 1.59e-01 c.1.10.1 66501 1p1xA 260 1.64e-01 1rj9A 304 3.67e-01 a.24.13.1 -631 c.37.1.10 -7129 1ub3A 220 4.06e-01 c.1.10.1 88395 1efvA 315 5.33e-01 1efvA c.26.2.3 31633 c.31.1.2 31728 1ttzA 87 5.82e-01 1pztA 286 1.15e+00 c.68.1.2 -8213 1nmmB 286 1.20e+00 c.68.1.2 80662 1fgxA 288 1.24e+00 1fgxA c.68.1.2 34508 1fc4A 401 1.30e+00 1bs0A c.67.1.4 59760 1ej0A 180 1.38e+00 1ej0A c.66.1.2 34179 1oz9A 150 1.58e+00 unknown_sccs -10588 2cmd 312 1.68e+00 2cmd c.2.1.5 30135 d.162.1.1 42102 1gt91 357 1.96e+00 1m3uA 264 1.98e+00 c.1.12.8 84784 1i8jA 323 2.48e+00 1b4kA c.1.10.3 61968 1un8A 552 2.54e+00 unknown_sccs -1942 c.32.1.2 -6792 d.79.2.2 -10401 1g38A 393 2.55e+00 2admA c.66.1.27 60235 1l6sA 323 2.70e+00 c.1.10.3 73627 1oi7A 288 3.08e+00 c.2.1.8 87049 c.23.4.1 87050 1uz5A 402 3.17e+00 b.85.6.1 -5029 b.103.1.1 -5069 c.57.1.2 -7902 1l6wA 220 3.45e+00 c.1.10.1 73632 1h7wA 1025 3.51e+00 1h7wA a.1.2.2 15683 c.1.4.1 28628 c.3.1.1 30324 c.4.1.1 30609 d.58.1.5 39007 1gteA 1025 4.03e+00 a.1.2.2 70440 c.1.4.1 70441 c.3.1.1 70442 c.4.1.1 70443 d.58.1.5 70444 1cvrA 435 4.05e+00 1cvrA b.1.18.12 21949 c.17.1.2 31006 1o4vA 183 4.16e+00 c.23.8.1 86628 1oc7A 364 4.34e+00 c.6.1.1 86794 1g97A 459 4.49e+00 1fwyA b.81.1.4 60394 c.68.1.5 60395 1fjmA 330 5.04e+00 1auiA d.159.1.3 42082 1va4A 279 5.21e+00 1d7yA 408 5.36e+00 1d7yA c.3.1.5 30565 c.3.1.5 30566 d.87.1.1 40204 1nvmA 345 5.45e+00 a.5.7.1 86249 c.1.10.5 86250 1vhmA 195 5.58e+00 d.110.2.1 -10828 1l8nA 679 5.66e+00 c.1.8.10 84564 d.92.2.2 84565 1j79A 347 5.72e+00 1j79A c.1.9.4 62675 1j5pA 253 5.86e+00 c.2.1.3 83092 d.81.1.3 71577 1hm9A 468 6.04e+00 b.81.1.4 65866 c.68.1.5 65867 1gp6A 356 7.02e+00 b.82.2.1 65441 1hyeA 313 7.02e+00 2cmd c.2.1.5 61400 d.162.1.1 61401 1o98A 511 7.24e+00 c.105.1.1 86684 c.76.1.3 86685 1eqjA 511 7.28e+00 1ejjA c.105.1.1 59495 c.76.1.3 59496 1lx7A 253 7.71e+00 c.56.2.1 74329 1m0wA 491 7.89e+00 c.30.1.4 78363 d.142.1.6 78364 1uayA 242 7.97e+00 c.2.1.2 88390 1vkmA 297 8.02e+00 1mzbA 136 8.02e+00 unknown_sccs -266 1jg1A 235 8.06e+00 c.66.1.7 66661 1qfeA 252 8.16e+00 1qfeA c.1.10.1 29167 2bvwA 362 8.20e+00 1bvwA c.6.1.1 30666 1tikA 213 8.51e+00 1jk7A 323 8.58e+00 1auiA d.159.1.3 63144 1g2qA 187 8.70e+00 c.61.1.1 65117 1oltA 457 8.72e+00 unknown_sccs -5688 1hgxA 183 8.79e+00 1tc1A c.61.1.1 34027 1gqnA 252 8.98e+00 c.1.10.1 -5494 1q7zA 566 9.35e+00 c.1.21.2 -5638 c.1.26.1 -5666 1tfr 305 9.40e+00 1tfr a.60.7.1 18081 c.120.1.2 33351 1pyfA 312 9.48e+00 c.1.7.1 -5251 1ff9A 450 9.98e+00 1ff9A c.2.1.3 30039 d.81.1.2 39954 1gntA 553 1.00e+01 e.26.1.1 70290 1e2uA 553 1.04e+01 1e1dA e.26.1.1 43362 1qz5A 375 1.05e+01 c.55.1.1 -7590 c.55.1.1 -7591 1ls1A 295 1.06e+01 a.24.13.1 78170 c.37.1.10 78171 1i1qA 520 1.13e+01 1qdlA d.161.1.1 61543 1d4xA 375 1.17e+01 1yagA c.55.1.1 59107 c.55.1.1 59108 1vkfA 188 1.19e+01 1im8A 244 1.21e+01 c.66.1.14 66212 1lucA 355 1.30e+01 1lucA c.1.16.1 29547 1ooyA 481 1.38e+01 unknown_sccs -6867 unknown_sccs -6873 1d2eA 397 1.44e+01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1dgaA 375 1.44e+01 1yagA 1oeyJ 107 1.46e+01 d.15.2.2 -9168 1m1nB 522 1.55e+01 c.92.2.3 78418 1qydA 313 1.58e+01 c.2.1.2 -5786 1ddgA 374 1.61e+01 1amoA b.43.4.1 25671 c.25.1.4 31559 1uouA 474 1.68e+01 a.46.2.1 -951 c.27.1.1 -6642 d.41.3.1 -9715 1qsmA 152 1.71e+01 1qsmA d.108.1.1 40808 1qczA 169 1.72e+01 1qczA c.23.8.1 31276 1vheA 373 1.73e+01 unknown_sccs -4280 c.56.5.4 -7890 1k1xA 659 1.73e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1sgoA 139 1.78e+01 unknown_sccs -10487 1dik 874 1.78e+01 1dik c.1.12.2 29304 c.8.1.1 30702 d.142.1.5 41572 1j6zA 376 1.79e+01 1yagA c.55.1.1 62667 c.55.1.1 62668 1o1zA 234 1.84e+01 c.1.18.3 86555 1f2vA 219 1.89e+01 1f2vA c.23.17.1 59627 1jcxA 267 1.93e+01 c.1.10.4 66510 1f8yA 157 1.93e+01 1f8xA c.23.14.1 31395 1fwsA 267 1.93e+01 1d9eA c.1.10.4 60063 1fxqA 267 1.94e+01 1d9eA c.1.10.4 60108 1b43A 340 1.97e+01 1a76 a.60.7.1 18092 c.120.1.2 33362 1kqzA 273 1.99e+01 c.1.8.5 68844 1ispA 181 2.02e+01 c.69.1.18 76778 1osdA 72 2.07e+01 1qflA 389 2.11e+01 1afwA c.95.1.1 35908 c.95.1.1 35909 1h6kZ 98 2.19e+01 d.58.7.1 60686 1i7qA 519 2.21e+01 1qdlA d.161.1.1 61901 1pe1A 267 2.24e+01 c.1.10.4 -5553 1twdA 256 2.26e+01 1eu8A 409 2.26e+01 1eu8A c.94.1.1 59502 1i6wA 181 2.26e+01 1i6wA c.69.1.18 61859 1qcwA 410 2.33e+01 1gox c.1.4.1 28622 1ccwA 137 2.33e+01 1be1 c.23.6.1 31238 1jw9B 249 2.33e+01 c.111.1.1 67377 1q0pA 223 2.38e+01 c.62.1.1 -7979 1ho1A 242 2.44e+01 1ho1A c.1.24.1 61097 1p3dA 475 2.44e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1d3vA 323 2.46e+01 1d3vA c.42.1.1 32559 1rxyA 253 2.50e+01 c.56.2.1 -7834 1gg1A 350 2.54e+01 1qr7A c.1.10.4 29187 1nrzA 164 2.55e+01 c.38.1.1 86131 1pvdA 537 2.56e+01 1zpdA c.31.1.3 31737 c.36.1.5 31777 c.36.1.9 31778 1id0A 152 2.60e+01 d.122.1.3 66111 1fb6A 105 2.61e+01 1thx c.47.1.1 32739 2ng1 293 2.63e+01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1mtpB 43 2.65e+01 1ma3A 253 2.66e+01 c.31.1.5 78883 1r64A 481 2.70e+01 b.18.1.20 -3151 c.41.1.1 -7297 1s6tA 285 2.70e+01 c.37.1.5 -7040 1vkjA 285 2.70e+01 1ht6A 405 2.75e+01 b.71.1.1 83629 c.1.8.1 83630 1id1A 153 2.80e+01 1id1A c.2.1.9 62286 1fecA 490 2.81e+01 3grs c.3.1.5 30489 c.3.1.5 30490 d.87.1.1 40176 1souA 194 2.81e+01 1jkeA 145 2.87e+01 c.110.1.1 66791 1l0qA 391 2.89e+01 b.1.3.1 77644 b.69.2.3 77645 1qsoA 149 2.90e+01 1qsmA d.108.1.1 40812 1n8fA 350 2.95e+01 c.1.10.4 85397 1scuA 288 2.96e+01 2scuA c.2.1.8 30307 c.23.4.1 31135 1us8A 147 3.05e+01 c.37.1.12 -7194 1qg8A 255 3.08e+01 1qg8A c.68.1.1 34505 1qdeA 224 3.12e+01 1qvaA c.37.1.19 32410 1ako 268 3.16e+01 1ako d.151.1.1 41779 1avaA 403 3.19e+01 1jdc b.71.1.1 27797 c.1.8.1 28784 1qo7A 394 3.21e+01 1qo7A c.69.1.11 34697 1iyxA 432 3.25e+01 c.1.11.1 83815 d.54.1.1 83816 1drw 273 3.26e+01 1drw c.2.1.3 30057 d.81.1.3 39972 1isiA 265 3.28e+01 e.4.1.1 71394 1fzrA 138 3.44e+01 1fzrA c.52.1.17 33336 1uiuA 502 3.48e+01 c.94.1.1 -8674 1ewqA 765 3.52e+01 1ewqA a.113.1.1 19069 c.37.1.12 32383 c.55.6.1 33740 d.75.2.1 39743 1rxwA 336 3.52e+01 a.60.7.1 -1041 c.120.1.2 -6680 1ofdA 1520 3.52e+01 b.80.4.1 86935 c.1.4.1 86936 d.153.1.1 86937 2btfA 375 3.53e+01 1yagA c.55.1.1 33429 c.55.1.1 33430 1pa2A 306 3.54e+01 1bgp a.93.1.1 18693 1ujnA 348 3.55e+01 e.22.1.1 -11998 1o8bA 219 3.65e+01 unknown_sccs 81180 d.58.40.1 81181 1q1oA 98 3.68e+01 d.15.2.2 -9172 1aq0A 306 3.74e+01 1aq0A c.1.8.3 28842 1kfwA 435 3.74e+01 c.1.8.5 77376 d.26.3.1 77377 1hdoA 206 3.79e+01 1he2A c.2.1.2 60965 1n2eA 300 3.83e+01 c.26.1.4 85268 1i52A 236 3.91e+01 1i52A c.68.1.13 61767 1qb7A 236 3.91e+01 1qb7A c.61.1.1 34087 1pz1A 333 3.92e+01 c.1.7.1 -5255 1a8s 273 3.92e+01 1brt c.69.1.12 34710 1usrA 454 3.99e+01 b.68.1.1 -4569