# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rlhA 173 8.72e-30 unknown_sccs -10786 1l6wA 220 1.51e+00 c.1.10.1 73632 2hvm 273 1.70e+00 1cnv c.1.8.5 28985 1skoA 143 2.22e+00 2pfkA 320 2.56e+00 3pfk c.89.1.1 35577 1jkeA 145 3.88e+00 c.110.1.1 66791 1gp6A 356 4.05e+00 b.82.2.1 65441 1b35B 255 4.26e+00 1b35B b.121.4.1 23334 1m3uA 264 4.35e+00 c.1.12.8 84784 1ikpA 613 4.47e+00 b.29.1.7 66182 d.166.1.1 66183 f.1.5.1 66184 1h6kZ 98 4.68e+00 d.58.7.1 60686 1kqzA 273 5.10e+00 c.1.8.5 68844 1orrA 347 5.13e+00 c.2.1.2 -5776 1q52A 314 5.50e+00 c.14.1.3 -6246 1ff9A 450 5.55e+00 1ff9A c.2.1.3 30039 d.81.1.2 39954 1lucA 355 6.79e+00 1lucA c.1.16.1 29547 1r5jA 337 7.12e+00 unknown_sccs -8471 1oyc 400 1.02e+01 1oyc c.1.4.1 28603 1cs8A 316 1.02e+01 1cs8A d.3.1.1 37065 1uzbA 516 1.07e+01 c.82.1.1 -8552 1qqeA 292 1.15e+01 1qqeA a.118.8.1 19210 1bea 127 1.19e+01 1bea a.52.1.2 17826 1uc7A 125 1.36e+01 c.47.1.1 -7414 1i0dA 332 1.54e+01 1pscA c.1.9.3 61487 1jg1A 235 1.61e+01 c.66.1.7 66661 1kxu 333 1.76e+01 1jkw a.74.1.1 18358 a.74.1.1 18359 1ttzA 87 1.79e+01 1hzyA 332 1.80e+01 1pscA c.1.9.3 61468 1m0wA 491 1.85e+01 c.30.1.4 78363 d.142.1.6 78364 1b06A 210 1.89e+01 1avmA a.2.11.1 15740 d.44.1.1 38737 1m56D 51 1.89e+01 f.23.8.1 74475 1o5kA 306 1.96e+01 c.1.10.1 -5482 1d1gA 168 2.05e+01 1d1gA c.71.1.1 34889 1kr7A 110 2.07e+01 a.1.1.4 72890 1jayA 212 2.21e+01 c.2.1.6 66478 1rypF 233 2.32e+01 1rypF d.153.1.4 41937 1pyfA 312 2.34e+01 c.1.7.1 -5251 1dl5A 317 2.38e+01 1dl5A c.66.1.7 64720 d.197.1.1 64721 2mhr 118 2.48e+01 2mhr a.24.4.1 16581 1bebA 162 2.57e+01 1bebA b.60.1.1 27115 1hyeA 313 2.60e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1nzyA 269 2.78e+01 1nzyA c.14.1.3 30903 1e8uA 454 2.84e+01 1e8tA b.68.1.1 59389 1shuX 182 3.04e+01 c.62.1.1 -7982 1mqsA 671 3.07e+01 e.25.1.1 79414 1g8fA 511 3.15e+01 1g8fA b.122.1.3 60348 c.26.1.5 60349 c.37.1.15 60350 1nv8A 284 3.17e+01 c.66.1.30 86224 1oeyJ 107 3.18e+01 d.15.2.2 -9168 1vjpA 394 3.29e+01 c.2.1.3 -5897 d.81.1.3 -10480 1j3vA 289 3.32e+01 a.100.1.1 -1303 c.2.1.6 -5947 1no4A 97 3.33e+01 h.1.24.1 85918 1dv1A 449 3.37e+01 1bncA b.84.2.1 28234 c.30.1.1 31641 d.142.1.2 41486 1ofuA 320 3.42e+01 c.32.1.1 86972 d.79.2.1 86973 1i3cA 149 3.62e+01 c.23.1.1 71112 1usrA 454 3.62e+01 b.68.1.1 -4569 1wdnA 226 3.68e+01 1lst c.94.1.1 35816 1ajsA 412 3.68e+01 1ajsA c.67.1.1 34276 1nktA 922 3.69e+01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1o20A 427 3.72e+01 c.82.1.1 86556 1o6lA 337 3.81e+01 d.144.1.7 81092 1gvdA 52 3.92e+01 a.4.1.3 83338 1jv2A 957 3.94e+01 b.1.15.1 67334 b.1.15.1 67335 b.1.15.1 67336 b.69.8.1 67337 1nqkA 381 3.99e+01 c.1.16.4 -5607