# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1rlhA	173	1.47e-26		unknown_sccs	-10786
1ttzA	87	1.94e+00			
1vhmA	195	2.03e+00		d.110.2.1	-10828
1gp6A	356	2.53e+00		b.82.2.1	65441
1sgoA	139	3.87e+00		unknown_sccs	-10487
1m3uA	264	4.46e+00		c.1.12.8	84784
1qsoA	149	4.86e+00	1qsmA	d.108.1.1	40812
1qsmA	152	6.97e+00	1qsmA	d.108.1.1	40808
1q0pA	223	7.21e+00		c.62.1.1	-7979
1ej0A	180	8.97e+00	1ej0A	c.66.1.2	34179
1h6kZ	98	9.03e+00		d.58.7.1	60686
1pztA	286	9.30e+00		c.68.1.2	-8213
1nmmB	286	9.30e+00		c.68.1.2	80662
1oi7A	288	9.67e+00		c.2.1.8	87049
				c.23.4.1	87050
1lvwA	295	9.80e+00		c.68.1.6	84723
1lucA	355	1.02e+01	1lucA	c.1.16.1	29547
1hm9A	468	1.09e+01		b.81.1.4	65866
				c.68.1.5	65867
1fgxA	288	1.10e+01	1fgxA	c.68.1.2	34508
1q52A	314	1.14e+01		c.14.1.3	-6246
1rj9A	304	1.26e+01		a.24.13.1	-631
				c.37.1.10	-7129
1tljA	213	1.26e+01			
1efvA	315	1.31e+01	1efvA	c.26.2.3	31633
				c.31.1.2	31728
2cmd	312	1.38e+01	2cmd	c.2.1.5	30135
				d.162.1.1	42102
1fc4A	401	1.40e+01	1bs0A	c.67.1.4	59760
1air	353	1.44e+01	1air	b.80.1.1	28018
1o88A	353	1.44e+01		b.80.1.1	81178
1cjaA	342	1.50e+01	1cjaA	d.144.1.3	41708
1j79A	347	1.83e+01	1j79A	c.1.9.4	62675
1ako	268	1.86e+01	1ako	d.151.1.1	41779
1l6wA	220	1.94e+01		c.1.10.1	73632
1gg1A	350	2.32e+01	1qr7A	c.1.10.4	29187
1g97A	459	2.36e+01	1fwyA	b.81.1.4	60394
				c.68.1.5	60395
1h7wA	1025	2.44e+01	1h7wA	a.1.2.2	15683
				c.1.4.1	28628
				c.3.1.1	30324
				c.4.1.1	30609
				d.58.1.5	39007
1orrA	347	2.52e+01		c.2.1.2	-5776
1nrjB	218	2.54e+01		c.37.1.8	86125
1tikA	213	2.66e+01			
1nvmA	345	2.66e+01		a.5.7.1	86249
				c.1.10.5	86250
1gteA	1025	2.70e+01		a.1.2.2	70440
				c.1.4.1	70441
				c.3.1.1	70442
				c.4.1.1	70443
				d.58.1.5	70444
1ujnA	348	2.81e+01		e.22.1.1	-11998
1qg8A	255	3.05e+01	1qg8A	c.68.1.1	34505
1n8fA	350	3.31e+01		c.1.10.4	85397
1g2qA	187	3.34e+01		c.61.1.1	65117
4ubpB	126	3.37e+01	1ubpB	b.85.3.1	28345
1jg1A	235	3.44e+01		c.66.1.7	66661
1d2sA	170	3.83e+01	1d2sA	b.29.1.4	24221
1pyfA	312	3.90e+01		c.1.7.1	-5251
1f5fA	205	3.92e+01	1d2sA	b.29.1.4	24222
1tz9A	367	3.99e+01