# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rlhA 173 4.71e-36 unknown_sccs -10786 1ttzA 87 5.03e-01 1vhmA 195 6.73e-01 d.110.2.1 -10828 1o88A 353 9.64e-01 b.80.1.1 81178 1fgxA 288 1.53e+00 1fgxA c.68.1.2 34508 1gp6A 356 1.64e+00 b.82.2.1 65441 1air 353 1.90e+00 1air b.80.1.1 28018 1sgoA 139 2.02e+00 unknown_sccs -10487 1id0A 152 2.39e+00 d.122.1.3 66111 1nmmB 286 2.44e+00 c.68.1.2 80662 1pztA 286 2.47e+00 c.68.1.2 -8213 1oeyJ 107 2.88e+00 d.15.2.2 -9168 1scuA 288 3.77e+00 2scuA c.2.1.8 30307 c.23.4.1 31135 1f0yA 302 3.80e+00 2hdhA a.100.1.3 18793 c.2.1.6 30197 2hvm 273 3.98e+00 1cnv c.1.8.5 28985 2plc 274 4.04e+00 2plc c.1.18.2 29614 1m3uA 264 4.56e+00 c.1.12.8 84784 1ej0A 180 5.02e+00 1ej0A c.66.1.2 34179 1l6wA 220 5.15e+00 c.1.10.1 73632 1oi7A 288 5.38e+00 c.2.1.8 87049 c.23.4.1 87050 1q52A 314 5.55e+00 c.14.1.3 -6246 1kqzA 273 5.77e+00 c.1.8.5 68844 1j79A 347 5.95e+00 1j79A c.1.9.4 62675 1ro0A 216 6.06e+00 unknown_sccs -11390 1ako 268 6.88e+00 1ako d.151.1.1 41779 1tljA 213 7.01e+00 1omzA 293 7.04e+00 c.68.1.15 87093 1uj2A 252 7.30e+00 c.37.1.6 -7061 1ro2A 216 7.34e+00 unknown_sccs -11391 1qsmA 152 7.40e+00 1qsmA d.108.1.1 40808 1uiuA 502 7.55e+00 c.94.1.1 -8674 1h6kZ 98 8.27e+00 d.58.7.1 60686 1d2sA 170 8.29e+00 1d2sA b.29.1.4 24221 1skoA 143 8.64e+00 1f5fA 205 8.78e+00 1d2sA b.29.1.4 24222 1ftrA 296 8.83e+00 1ftrA d.58.33.1 39485 d.58.33.1 39486 1gg1A 350 8.90e+00 1qr7A c.1.10.4 29187 1fc4A 401 8.96e+00 1bs0A c.67.1.4 59760 1n8fA 350 8.99e+00 c.1.10.4 85397 1g2qA 187 9.20e+00 c.61.1.1 65117 1l6sA 323 9.35e+00 c.1.10.3 73627 1qsoA 149 9.83e+00 1qsmA d.108.1.1 40812 1i8jA 323 9.85e+00 1b4kA c.1.10.3 61968 1o17A 345 9.97e+00 a.46.2.1 80765 c.27.1.1 80766 1hyeA 313 1.04e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1s5dA 240 1.14e+01 d.166.1.1 -11563 1nv8A 284 1.21e+01 c.66.1.30 86224 1qorA 327 1.23e+01 1qorA b.35.1.2 24766 c.2.1.1 29782 1mw7A 240 1.32e+01 e.39.1.1 79557 1nvmA 345 1.36e+01 a.5.7.1 86249 c.1.10.5 86250 1hgxA 183 1.40e+01 1tc1A c.61.1.1 34027 1hm9A 468 1.55e+01 b.81.1.4 65866 c.68.1.5 65867 1li4A 432 1.56e+01 c.2.1.4 84616 c.23.12.3 84617 1o8bA 219 1.66e+01 unknown_sccs 81180 d.58.40.1 81181 1jg1A 235 1.67e+01 c.66.1.7 66661 1vheA 373 1.68e+01 unknown_sccs -4280 c.56.5.4 -7890 1d4fA 431 1.78e+01 1b3rA c.2.1.4 30110 c.23.12.3 31370 1m0wA 491 1.78e+01 c.30.1.4 78363 d.142.1.6 78364 1g97A 459 1.84e+01 1fwyA b.81.1.4 60394 c.68.1.5 60395 1ugmA 125 1.94e+01 1ltsA 185 1.97e+01 1lt3A d.166.1.1 42229 1l2lA 457 1.98e+01 c.72.1.3 77656 1n9lA 109 2.00e+01 d.110.3.6 85468 1j5pA 253 2.03e+01 c.2.1.3 83092 d.81.1.3 71577 1h1nA 305 2.07e+01 c.1.8.3 70855 1i7qA 519 2.12e+01 1qdlA d.161.1.1 61901 1pyfA 312 2.16e+01 c.1.7.1 -5251 1jf9A 408 2.16e+01 1c0nA c.67.1.3 62931 1p3dA 475 2.16e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1rcqA 357 2.18e+01 1un8A 552 2.22e+01 unknown_sccs -1942 c.32.1.2 -6792 d.79.2.2 -10401 1efvA 315 2.27e+01 1efvA c.26.2.3 31633 c.31.1.2 31728 1lci 550 2.37e+01 1lci e.23.1.1 43349 1mzbA 136 2.37e+01 unknown_sccs -266 1lvwA 295 2.45e+01 c.68.1.6 84723 1gntA 553 2.50e+01 e.26.1.1 70290 1gt91 357 2.52e+01 2cmd 312 2.57e+01 2cmd c.2.1.5 30135 d.162.1.1 42102 1i52A 236 2.66e+01 1i52A c.68.1.13 61767 1e2uA 553 2.72e+01 1e1dA e.26.1.1 43362 1e3mA 800 2.77e+01 1ewqA a.113.1.1 19075 c.37.1.12 32389 c.55.6.1 33746 d.75.2.1 39747 1orrA 347 2.82e+01 c.2.1.2 -5776 1shuX 182 2.90e+01 c.62.1.1 -7982 1cvrA 435 2.95e+01 1cvrA b.1.18.12 21949 c.17.1.2 31006 1eny 268 2.95e+01 1eny c.2.1.2 29910 1o5kA 306 2.99e+01 c.1.10.1 -5482 1q0pA 223 3.01e+01 c.62.1.1 -7979 1odkA 235 3.06e+01 c.56.2.1 86863 1d7yA 408 3.24e+01 1d7yA c.3.1.5 30565 c.3.1.5 30566 d.87.1.1 40204 1jnuA 104 3.36e+01 d.110.3.6 71762 1uz5A 402 3.37e+01 b.85.6.1 -5029 b.103.1.1 -5069 c.57.1.2 -7902 1i1qA 520 3.44e+01 1qdlA d.161.1.1 61543 1o4vA 183 3.44e+01 c.23.8.1 86628 1vkfA 188 3.48e+01 1h7wA 1025 3.65e+01 1h7wA a.1.2.2 15683 c.1.4.1 28628 c.3.1.1 30324 c.4.1.1 30609 d.58.1.5 39007 1gteA 1025 3.65e+01 a.1.2.2 70440 c.1.4.1 70441 c.3.1.1 70442 c.4.1.1 70443 d.58.1.5 70444 1dl5A 317 3.69e+01 1dl5A c.66.1.7 64720 d.197.1.1 64721 1ir6A 424 3.70e+01 c.107.1.2 71342 1ne9A 335 3.72e+01 d.108.1.4 -10805 d.108.1.4 -10806 1p42A 270 3.73e+01 d.14.1.7 87754 d.14.1.7 87755 1rqlA 267 3.73e+01 c.108.1.3 -6814 1ks9A 291 3.80e+01 a.100.1.7 68857 c.2.1.6 68858 1vig 71 3.83e+01 1vih d.51.1.1 38806 1r5jA 337 3.91e+01 unknown_sccs -8471 1v2xA 194 3.93e+01 c.116.1.1 -6704 1jksA 294 3.99e+01 d.144.1.7 71710