# List of top-scoring protein chains for t04-100-30-bys hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1rlhA	173	4.62e-21		unknown_sccs	-10786
1m3uA	264	1.45e+00		c.1.12.8	84784
1gp6A	356	3.13e+00		b.82.2.1	65441
1ttzA	87	3.15e+00			
1q52A	314	3.29e+00		c.14.1.3	-6246
1neeA	138	4.63e+00		unknown_sccs	-9002
				g.59.1.1	-12824
1gg1A	350	4.71e+00	1qr7A	c.1.10.4	29187
1dvkA	173	4.80e+00	1dvkA	a.72.1.1	18319
1nmmB	286	6.03e+00		c.68.1.2	80662
1n8fA	350	7.83e+00		c.1.10.4	85397
1pa2A	306	7.85e+00	1bgp	a.93.1.1	18693
1pztA	286	8.23e+00		c.68.1.2	-8213
1j79A	347	9.02e+00	1j79A	c.1.9.4	62675
1skoA	143	9.07e+00			
1scuA	288	9.67e+00	2scuA	c.2.1.8	30307
				c.23.4.1	31135
1vhmA	195	9.95e+00		d.110.2.1	-10828
1uz5A	402	1.30e+01		b.85.6.1	-5029
				b.103.1.1	-5069
				c.57.1.2	-7902
1ujnA	348	1.32e+01		e.22.1.1	-11998
1lrwA	600	1.34e+01		b.70.1.1	-4629
1lvwA	295	1.40e+01		c.68.1.6	84723
1l6wA	220	1.40e+01		c.1.10.1	73632
1mpp	361	1.41e+01	2rmpA	b.50.1.2	26856
1d7yA	408	1.44e+01	1d7yA	c.3.1.5	30565
				c.3.1.5	30566
				d.87.1.1	40204
1qg8A	255	1.56e+01	1qg8A	c.68.1.1	34505
1hyeA	313	1.59e+01	2cmd	c.2.1.5	61400
				d.162.1.1	61401
1i0rA	169	1.59e+01	1i0rA	b.45.1.2	61489
1nv8A	284	1.65e+01		c.66.1.30	86224
1h6kZ	98	1.74e+01		d.58.7.1	60686
1vk6A	269	1.76e+01		unknown_sccs	-10923
				unknown_sccs	-10924
1i0sA	169	1.78e+01	1i0rA	b.45.1.2	61491
2cmd	312	1.79e+01	2cmd	c.2.1.5	30135
				d.162.1.1	42102
1ej0A	180	1.81e+01	1ej0A	c.66.1.2	34179
1fgxA	288	1.85e+01	1fgxA	c.68.1.2	34508
1j0aA	325	1.87e+01		c.79.1.1	83871
1q2wA	308	1.96e+01		b.47.1.4	88355
1fc4A	401	1.99e+01	1bs0A	c.67.1.4	59760
1q1oA	98	2.13e+01		d.15.2.2	-9172
1v2xA	194	2.16e+01		c.116.1.1	-6704
1rfmA	344	2.23e+01		c.122.1.1	-8032
1pg5A	299	2.23e+01			
1tz9A	367	2.24e+01			
1oi7A	288	2.37e+01		c.2.1.8	87049
				c.23.4.1	87050
1lci	550	2.37e+01	1lci	e.23.1.1	43349
1pyfA	312	2.41e+01		c.1.7.1	-5251
1i7qA	519	2.41e+01	1qdlA	d.161.1.1	61901
1uumA	372	2.43e+01		c.1.4.1	-5193
1hpgA	187	2.49e+01	1qq4A	b.47.1.1	25813
1jg1A	235	2.49e+01		c.66.1.7	66661
1v7cA	351	2.54e+01		c.79.1.1	-8512
1rj9A	304	2.55e+01		a.24.13.1	-631
				c.37.1.10	-7129
1qmhA	347	2.70e+01	1qmhA	c.47.2.1	33082
				d.68.2.1	39568
1kqzA	273	2.70e+01		c.1.8.5	68844
1uslA	170	2.78e+01		c.121.1.1	-6682
1ks9A	291	2.80e+01		a.100.1.7	68857
				c.2.1.6	68858
1gntA	553	2.87e+01		e.26.1.1	70290
1um0A	365	2.95e+01			
1qsmA	152	3.01e+01	1qsmA	d.108.1.1	40808
1dhs	344	3.07e+01	1dhs	c.31.1.1	31727
1ozhA	566	3.13e+01		c.31.1.3	-6737
				c.36.1.5	-6895
				c.36.1.9	-6935
1o4vA	183	3.19e+01		c.23.8.1	86628
1xo1A	291	3.20e+01	1exnA	a.60.7.1	18086
				c.120.1.2	33356
1r44A	202	3.26e+01			
1bd3A	243	3.28e+01	1bd3A	c.61.1.1	34098
1f8fA	371	3.31e+01		b.35.1.2	83246
				c.2.1.1	83247
1orrA	347	3.32e+01		c.2.1.2	-5776
1d4fA	431	3.37e+01	1b3rA	c.2.1.4	30110
				c.23.12.3	31370
1qorA	327	3.43e+01	1qorA	b.35.1.2	24766
				c.2.1.1	29782
1h7wA	1025	3.52e+01	1h7wA	a.1.2.2	15683
				c.1.4.1	28628
				c.3.1.1	30324
				c.4.1.1	30609
				d.58.1.5	39007
1l6sA	323	3.56e+01		c.1.10.3	73627
1v1rA	400	3.57e+01			
1efvA	315	3.58e+01	1efvA	c.26.2.3	31633
				c.31.1.2	31728
1fecA	490	3.64e+01	3grs	c.3.1.5	30489
				c.3.1.5	30490
				d.87.1.1	40176
1vjeA	166	3.64e+01		d.185.1.2	-10261
1i8jA	323	3.84e+01	1b4kA	c.1.10.3	61968
1ako	268	3.88e+01	1ako	d.151.1.1	41779
1j1hA	144	3.89e+01		b.111.1.1	77056
1rlzA	369	3.93e+01			
1vig	71	3.98e+01	1vih	d.51.1.1	38806
1j3mA	129	4.00e+01