# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1rlhA	173	7.17e-31		unknown_sccs	-10786
1ttzA	87	2.23e+00			
1l6wA	220	3.00e+00		c.1.10.1	73632
7pcy	98	3.16e+00	1plc	b.6.1.1	22863
1dfaA	454	4.05e+00	1vdeA	b.86.1.2	28375
				d.95.2.2	40575
				d.95.2.2	40576
1q0pA	223	6.56e+00		c.62.1.1	-7979
1orrA	347	6.80e+00		c.2.1.2	-5776
1skoA	143	6.83e+00			
1vig	71	7.86e+00	1vih	d.51.1.1	38806
1gp6A	356	8.50e+00		b.82.2.1	65441
1qjvA	342	1.17e+01	1qjvA	b.80.1.5	28035
1svy	114	1.22e+01	1svy	d.109.1.1	40831
1lucA	355	1.37e+01	1lucA	c.1.16.1	29547
1bl1	31	1.67e+01	1bl1	j.15.1.1	46154
1iuz	98	1.76e+01	1plc	b.6.1.1	22861
1kutA	230	1.80e+01		d.143.1.1	73017
1dc1A	323	1.91e+01	1dc1A	c.52.1.11	33321
1neeA	138	2.05e+01		unknown_sccs	-9002
				g.59.1.1	-12824
1ikpA	613	2.10e+01		b.29.1.7	66182
				d.166.1.1	66183
				f.1.5.1	66184
1ro2A	216	2.16e+01		unknown_sccs	-11391
1ff9A	450	2.23e+01	1ff9A	c.2.1.3	30039
				d.81.1.2	39954
1jhdA	396	2.38e+01		b.122.1.3	66712
				c.26.1.5	66713
1h6kZ	98	2.39e+01		d.58.7.1	60686
1vhmA	195	2.41e+01		d.110.2.1	-10828
1ro0A	216	2.55e+01		unknown_sccs	-11390
1umuA	116	2.55e+01	1umuA	b.87.1.1	28382
1czaN	917	2.79e+01	1qhaA	c.55.1.3	33463
				c.55.1.3	33464
				c.55.1.3	33465
				c.55.1.3	33466
1wdnA	226	3.22e+01	1lst	c.94.1.1	35816
1fm0E	150	3.37e+01	1fmaE	d.41.5.1	38629
1b35B	255	3.50e+01	1b35B	b.121.4.1	23334
1mr8A	93	3.56e+01	1b4cA	a.39.1.2	17186
1pdkB	157	3.61e+01	1pdkB	b.2.3.2	22427