# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1t0tV	248	3.97e-49			
1q8bA	105	2.95e-01		unknown_sccs	-9958
1uuqA	440	6.74e-01		c.1.8.3	-5321
1ii7A	333	1.94e+00	1ii7A	d.159.1.4	62415
1l8nA	679	2.37e+00		c.1.8.10	84564
				d.92.2.2	84565
1hjxA	362	4.66e+00		c.1.8.5	83512
				d.26.3.1	83513
1ftrA	296	4.93e+00	1ftrA	d.58.33.1	39485
				d.58.33.1	39486
1fuiA	591	4.99e+00	1fuiA	b.43.2.1	25674
				c.85.1.1	35444
1souA	194	5.31e+00			
1qhfA	240	5.61e+00	1qhfA	c.60.1.1	33960
1d2eA	397	5.74e+00	1efcA	b.43.3.1	25701
				b.44.1.1	25741
				c.37.1.8	32136
1kveB	77	5.76e+00	1kveB		
1esiA	262	5.99e+00	1skf	e.3.1.1	42682
1es5A	262	6.20e+00	1skf	e.3.1.1	42679
1sbp	310	7.68e+00	1sbp	c.94.1.1	35760
1um0A	365	8.57e+00			
1cqmA	101	1.01e+01	1ris	d.58.14.1	39321
1n0uA	842	1.16e+01		b.43.3.1	79757
				c.37.1.8	79758
				d.14.1.1	79759
				d.58.11.1	79760
				d.58.11.1	79761
1yacA	208	1.16e+01	1yacA	unknown_sccs	31757
1atlA	202	1.18e+01	1atlA	d.92.1.9	40322
1m55A	197	1.26e+01		d.89.1.3	74469
1f75A	249	1.30e+01	1f75A	c.101.1.1	59662
1bb9	115	1.53e+01	1bb9	b.34.2.1	24554
1rkuA	206	1.62e+01		unknown_sccs	-6823
1hfc	169	1.75e+01	1hfc	d.92.1.11	40335
1eonA	245	1.80e+01	1rvaA	c.52.1.2	33238
1shdA	107	1.86e+01	1fmk	d.93.1.1	40440
1rvaA	244	2.04e+01	1rvaA	c.52.1.2	33240
1nf8A	207	2.06e+01		unknown_sccs	85630
1ojqA	212	2.11e+01		d.166.1.1	-11568
1bkjA	240	2.11e+01	1bkjA	d.90.1.1	40243
1louA	101	2.13e+01	1ris	d.58.14.1	39323
1tk9A	188	2.14e+01			
1a8h	500	2.16e+01	1a8h	a.27.1.1	16922
				c.26.1.1	31589
1sx5A	244	2.26e+01		c.52.1.2	-7551
1s2xA	206	2.29e+01			
1j57A	143	2.49e+01		d.221.1.1	77079
1jmsA	381	2.61e+01		a.60.6.1	66889
				a.60.12.1	75862
				d.218.1.2	75863
1hi9A	274	2.64e+01	1hi9A	c.99.1.1	61063
1nj4A	363	2.69e+01		b.105.1.1	80545
				e.3.1.1	80546
1qamA	244	2.87e+01	2ercA	c.66.1.24	34220
1nzoA	363	2.92e+01		b.105.1.1	-2933
				e.3.1.1	-11784
1b6a	478	2.93e+01	1bn5	a.4.5.25	16223
				d.127.1.1	41160
1otjA	283	3.27e+01		b.82.2.5	-4893
1vjxA	157	3.32e+01		a.25.1.1	-654
1fsu	492	3.39e+01	1auk	c.76.1.2	35032
1soxA	466	3.44e+01	1soxA	b.1.18.6	21947
				d.120.1.1	41090
				d.176.1.1	42563
1o4rA	108	3.46e+01		d.93.1.1	-10624
2olbA	517	3.61e+01	1jevA	c.94.1.1	35721
1jj2C	246	3.62e+01	1ffkC	c.22.1.1	63087
1ut8A	291	3.87e+01		a.60.7.1	-1036
				c.120.1.2	-6675
1hq8A	123	3.96e+01	1b6e	d.169.1.1	61127
1senA	164	3.97e+01			
1s72C	246	3.98e+01