# List of top-scoring protein chains for T0270.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qjhA 101 9.90e-01 1ris d.58.14.1 39326 1kw4A 89 1.35e+00 a.60.1.2 73077 1cqmA 101 2.47e+00 1ris d.58.14.1 39321 1a0i 348 2.67e+00 1a0i b.40.4.6 25363 d.142.2.1 41577 1mbqA 220 2.82e+00 b.47.1.2 78920 1i11A 81 2.87e+00 1hryA a.21.1.1 16431 1p6gF 135 3.36e+00 i.1.1.1 87824 1r62A 160 3.85e+00 1nmeA 146 4.31e+00 c.17.1.1 85874 1rhjA 147 4.37e+00 c.17.1.1 -7916 1l5sA 847 4.52e+00 c.87.1.4 77716 1fc0A 846 4.52e+00 1a8i c.87.1.4 35473 1hj8A 222 4.58e+00 b.47.1.2 65844 2stbE 222 4.66e+00 5ptp b.47.1.2 26006 2tbs 222 4.81e+00 5ptp b.47.1.2 26009 1bit 237 4.90e+00 5ptp b.47.1.2 26008 1louA 101 4.90e+00 1ris d.58.14.1 39323 1okcA 297 5.03e+00 unknown_sccs -12339 1utmA 242 5.18e+00 b.47.1.2 -4184 1q8bA 105 5.39e+00 unknown_sccs -9958 1qd7E 97 5.73e+00 1ris i.1.1.3 45868 1g1xA 98 5.80e+00 1ris d.58.14.1 39327 2pna 104 5.85e+00 1qadA d.93.1.1 40501 1ris 101 5.95e+00 1ris d.58.14.1 39314 1i3oA 175 6.17e+00 1pauA c.17.1.1 61603 1i4oA 280 6.52e+00 1pauA c.17.1.1 61721 1d2eA 397 6.81e+00 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1i51A 148 7.06e+00 c.17.1.1 66029 1fbl 370 7.41e+00 1hfc b.66.1.1 27539 d.92.1.11 40347 1gqfA 265 8.01e+00 c.17.1.1 65470 1a0jA 223 8.13e+00 5ptp b.47.1.2 26002 1hfc 169 8.19e+00 1hfc d.92.1.11 40335 1owaA 156 8.62e+00 a.7.1.1 -388 1kmcA 303 9.12e+00 c.17.1.1 68690 1cglA 169 9.35e+00 1hfc d.92.1.11 40341 1udmA 149 9.48e+00 1ap8 213 9.71e+00 1ap8 d.86.1.1 40151 1nmsA 249 9.96e+00 c.17.1.1 85879 1qx3A 257 1.02e+01 c.17.1.1 -7914 1cp3A 277 1.08e+01 1pauA c.17.1.1 30992 1d2sA 170 1.17e+01 1d2sA b.29.1.4 24221 1cgfA 162 1.18e+01 1hfc d.92.1.11 40339 1rvxB 160 1.19e+01 h.3.1.1 -12978 1cge 168 1.24e+01 1hfc d.92.1.11 40336 1qrdA 273 1.26e+01 1d4aA c.23.5.3 31217 1ka9H 200 1.30e+01 c.23.16.1 77308 1jssA 224 1.35e+01 d.129.3.2 71844 1qbgA 272 1.36e+01 1d4aA c.23.5.3 31227 1h69A 273 1.36e+01 c.23.5.3 60665 1d4aA 273 1.36e+01 1d4aA c.23.5.3 31219 1v5pA 126 1.39e+01 1k86A 253 1.48e+01 c.17.1.1 68288 1oz7A 131 1.51e+01 d.169.1.1 -11622 1s5lD 352 1.55e+01 1dxqA 273 1.67e+01 1d4aA c.23.5.3 31213 1qcrC 378 1.71e+01 1be3C f.32.1.1 75931 f.21.1.2 75932 1ppjC 379 1.72e+01 1f5rA 231 1.73e+01 5ptp b.47.1.2 59654 1f1jA 305 1.76e+01 1pauA c.17.1.1 59596 1k88A 253 1.94e+01 c.17.1.1 68290 1ql9A 223 1.94e+01 5ptp b.47.1.2 25986 1o5kA 306 1.95e+01 c.1.10.1 -5482 1oa3A 218 1.99e+01 b.29.1.11 86727 966c 157 2.00e+01 1hfc d.92.1.11 40338 1dllA 441 2.18e+01 1a8d b.29.1.6 24263 b.42.4.2 25608 1dfqA 444 2.22e+01 1a8d b.29.1.6 24267 b.42.4.2 25612 1kdkA 177 2.26e+01 b.29.1.4 72351 1a8d 452 2.30e+01 1a8d b.29.1.6 24262 b.42.4.2 25607 1h8vA 218 2.35e+01 2nlrA b.29.1.11 60795 1diwA 441 2.38e+01 1a8d b.29.1.6 24264 b.42.4.2 25609 1lhwA 189 2.42e+01 b.29.1.4 77966 1oa2A 218 2.42e+01 b.29.1.11 86721 1nmbN 470 2.46e+01 2qwc b.68.1.1 27583 1azzA 226 2.47e+01 5ptp b.47.1.2 26072 1t8hA 277 2.52e+01 1jhfA 202 2.53e+01 a.4.5.2 63057 b.87.1.1 63058 1vixA 420 2.56e+01 c.56.5.4 -7866 d.58.19.1 -10090 1fkmA 396 2.57e+01 1fkmA a.69.2.1 18315 a.69.2.1 18316 1d0hA 469 2.58e+01 1a8d b.29.1.6 24265 b.42.4.2 25610 1qf6A 642 2.58e+01 1qf6A c.51.1.1 33210 d.15.10.1 39551 d.67.1.1 39562 d.104.1.1 40759 1umrA 135 2.59e+01 d.169.1.1 -11615 1f5fA 205 2.62e+01 1d2sA b.29.1.4 24222 1fv3A 472 2.76e+01 b.29.1.6 60038 b.42.4.2 60039 1wpoA 256 2.77e+01 1lay b.57.1.1 27012 2wpoA 256 2.85e+01 1lay b.57.1.1 27017 6pfkA 319 2.88e+01 3pfk c.89.1.1 35583 4pfk 319 2.90e+01 3pfk c.89.1.1 35582 1pyoA 167 2.92e+01 c.17.1.1 -7932 1olqA 218 3.04e+01 b.29.1.11 -3486 1souA 194 3.09e+01 1obdA 306 3.12e+01 d.143.1.1 86767 1vduA 172 3.16e+01 unknown_sccs -1651 1mdbA 539 3.28e+01 e.23.1.1 79008 1on4A 174 3.30e+01 c.47.1.10 -7512 1r8sA 164 3.33e+01 c.37.1.8 -7082 1jheA 135 3.35e+01 b.87.1.1 63055 1and 223 3.45e+01 5ptp b.47.1.2 25985 1fmjA 351 3.59e+01 c.37.1.5 59879 1anb 223 3.63e+01 5ptp b.47.1.2 25998 1brbE 223 3.67e+01 5ptp b.47.1.2 25983 1amhA 223 3.67e+01 5ptp b.47.1.2 25994 1dpo 223 3.71e+01 5ptp b.47.1.2 25975 1anc 223 3.72e+01 5ptp b.47.1.2 25982 1k9oE 223 3.73e+01 b.47.1.2 68355 3tgiE 223 3.80e+01 5ptp b.47.1.2 25976 1f2fA 104 3.88e+01 1fmk d.93.1.1 40455 3tgkE 231 3.90e+01 5ptp b.47.1.2 63338 1lf9B 674 3.90e+01 a.102.1.5 77924 b.30.5.5 77925 1fy8E 231 3.95e+01 5ptp b.47.1.2 25978 1lf6A 684 3.96e+01 a.102.1.5 77918 b.30.5.5 77919