# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1h6oA	204	4.50e-01		a.146.1.1	60689
1diwA	441	3.47e+00	1a8d	b.29.1.6	24264
				b.42.4.2	25609
1rw7A	243	4.09e+00		c.23.16.2	-6530
1cp3A	277	4.51e+00	1pauA	c.17.1.1	30992
1ro2A	216	4.80e+00		unknown_sccs	-11391
1ro0A	216	4.87e+00		unknown_sccs	-11390
1d0hA	469	5.71e+00	1a8d	b.29.1.6	24265
				b.42.4.2	25610
1r8sA	164	6.77e+00		c.37.1.8	-7082
1souA	194	7.44e+00			
1i9zA	347	7.96e+00	1i9yA	d.151.1.2	62102
1a8d	452	8.46e+00	1a8d	b.29.1.6	24262
				b.42.4.2	25607
1sedA	117	9.47e+00			
1ap6A	198	1.05e+01	1avmA	a.2.11.1	15746
				d.44.1.1	38705
1i9yA	347	1.06e+01	1i9yA	d.151.1.2	62101
1abmA	198	1.11e+01	1avmA		
2ay1A	394	1.20e+01	1ajsA	c.67.1.1	34357
1n0nA	199	1.21e+01		a.2.11.1	79750
				d.44.1.1	79751
1iynA	295	1.32e+01		a.93.1.1	-1244
1kf6A	602	1.35e+01		a.7.3.1	72394
				c.3.1.4	72395
				d.168.1.1	72396
1hmpA	217	1.63e+01	1qk3A	c.61.1.1	34075
1np1A	184	1.73e+01	1np1A	b.60.1.1	27155
1j2iA	166	1.73e+01			
1o3yA	166	1.73e+01		c.37.1.8	86618
1ky3A	182	1.76e+01		c.37.1.8	73193
1hurA	180	1.82e+01	1hurA	c.37.1.8	32052
1qvzA	237	1.87e+01		c.23.16.2	-6537
1hb6A	86	1.99e+01		a.11.1.1	70959
1lj0A	92	2.04e+01		d.120.1.1	78019
1c8gA	548	2.11e+01	2cas	b.121.5.2	23380
1ile	821	2.25e+01	1ile	a.27.1.1	16924
				b.51.1.1	26889
				c.26.1.1	31591
1f9yA	158	2.30e+01		d.58.30.1	83249
1ap8	213	2.64e+01	1ap8	d.86.1.1	40151
1s72V	71	2.69e+01			
1rrpB	134	2.72e+01	1rrpB	b.55.1.3	26995
1ly1A	181	2.77e+01		c.37.1.1	74334
1qhlA	227	2.81e+01	1qhlA	c.37.1.12	32382
1q8bA	105	2.91e+01		unknown_sccs	-9958
1i4nA	251	3.11e+01		c.1.2.4	71114
6pfkA	319	3.13e+01	3pfk	c.89.1.1	35583
1uuqA	440	3.14e+01		c.1.8.3	-5321
2cas	548	3.15e+01	2cas	b.121.5.2	23376
1o0pA	104	3.34e+01		d.58.7.1	86535
1eqoA	158	3.35e+01	1hka		
1as4A	341	3.48e+01	1sek	e.1.1.1	42623
1gv3A	248	3.56e+01		a.2.11.1	70585
				d.44.1.1	70586
1p27B	106	3.59e+01		d.58.7.1	-10020
1jj2U	70	3.60e+01	1ffkS	a.2.2.1	63106
1veaA	148	3.61e+01			
1oo0B	110	3.64e+01		d.58.7.1	87183
1hka	158	3.65e+01	1hka	d.58.30.1	39433
1k0eA	453	3.67e+01		d.161.1.1	67938
1s2xA	206	3.98e+01