# List of top-scoring protein chains for T0270.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2pna 104 1.19e+00 1qadA d.93.1.1 40501 1qjhA 101 1.82e+00 1ris d.58.14.1 39326 1ky8A 501 2.13e+00 c.82.1.1 77628 1f5rA 231 2.47e+00 5ptp b.47.1.2 59654 1a0jA 223 2.62e+00 5ptp b.47.1.2 26002 1and 223 2.70e+00 5ptp b.47.1.2 25985 1anc 223 3.11e+00 5ptp b.47.1.2 25982 1anb 223 3.16e+00 5ptp b.47.1.2 25998 1amhA 223 3.16e+00 5ptp b.47.1.2 25994 1dpo 223 3.17e+00 5ptp b.47.1.2 25975 1k9oE 223 3.19e+00 b.47.1.2 68355 3tgiE 223 3.24e+00 5ptp b.47.1.2 25976 1brbE 223 3.24e+00 5ptp b.47.1.2 25983 1fy8E 231 3.40e+00 5ptp b.47.1.2 25978 3tgjE 233 3.43e+00 5ptp b.47.1.2 25992 1f7zA 233 3.43e+00 5ptp b.47.1.2 59681 3tgkE 231 3.49e+00 5ptp b.47.1.2 63338 1ql9A 223 3.70e+00 5ptp b.47.1.2 25986 1a0i 348 3.80e+00 1a0i b.40.4.6 25363 d.142.2.1 41577 1nr6A 473 3.95e+00 a.104.1.1 -1464 1f2fA 104 4.07e+00 1fmk d.93.1.1 40455 1q8bA 105 4.22e+00 unknown_sccs -9958 1cqmA 101 4.40e+00 1ris d.58.14.1 39321 1co7E 245 4.68e+00 b.47.1.2 76135 1hqlA 257 5.14e+00 b.29.1.1 65907 1fjmA 330 6.01e+00 1auiA d.159.1.3 42082 1jt8A 102 6.37e+00 b.40.4.5 63279 1s70A 330 6.83e+00 1jk7A 323 7.09e+00 1auiA d.159.1.3 63144 1i11A 81 7.48e+00 1hryA a.21.1.1 16431 1louA 101 7.98e+00 1ris d.58.14.1 39323 1odbA 95 8.05e+00 a.39.1.2 86840 1ei5A 520 8.27e+00 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1d2eA 397 8.95e+00 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1qd7E 97 9.16e+00 1ris i.1.1.3 45868 1g1xA 98 9.19e+00 1ris d.58.14.1 39327 1ris 101 9.33e+00 1ris d.58.14.1 39314 1mbqA 220 1.03e+01 b.47.1.2 78920 1slwB 223 1.15e+01 5ptp b.47.1.2 25979 1o4rA 108 1.21e+01 d.93.1.1 -10624 1fu5A 111 1.22e+01 1qadA d.93.1.1 40505 1p1lA 102 1.22e+01 d.58.5.2 87695 1a1aA 107 1.24e+01 1fmk d.93.1.1 40449 1ooyA 481 1.25e+01 unknown_sccs -6867 unknown_sccs -6873 1e8aA 91 1.26e+01 1b4cA a.39.1.2 17188 1shdA 107 1.26e+01 1fmk d.93.1.1 40440 1sluB 223 1.28e+01 5ptp b.47.1.2 25977 1oozA 475 1.29e+01 unknown_sccs -6869 unknown_sccs -6875 1ixkA 315 1.47e+01 unknown_sccs -8099 1wpoA 256 1.48e+01 1lay b.57.1.1 27012 2wpoA 256 1.51e+01 1lay b.57.1.1 27017 1obdA 306 1.51e+01 d.143.1.1 86767 1bkm 113 1.52e+01 1fmk d.93.1.1 40426 1bkl 113 1.55e+01 1fmk d.93.1.1 40428 1skj 113 1.55e+01 1fmk d.93.1.1 40427 1oo3A 111 1.58e+01 d.93.1.1 87184 1is0A 106 1.59e+01 d.93.1.1 66299 1hj8A 222 1.61e+01 b.47.1.2 65844 1nzlA 103 1.63e+01 d.93.1.1 86453 1shaA 104 1.63e+01 1fmk d.93.1.1 40424 1bit 237 1.64e+01 5ptp b.47.1.2 26008 1p13A 102 1.64e+01 d.93.1.1 -10625 2stbE 222 1.72e+01 5ptp b.47.1.2 26006 1p0yA 444 1.73e+01 a.166.1.1 87654 b.85.7.3 87655 1m56C 266 1.78e+01 f.25.1.1 74474 1ntp 223 1.86e+01 5ptp b.47.1.2 25858 1utmA 242 1.86e+01 b.47.1.2 -4184 1gxsB 158 1.96e+01 1pw5A 253 2.02e+01 unknown_sccs -6852 1h2hA 241 2.05e+01 c.2.1.3 83058 d.81.1.3 70861 2tbs 222 2.06e+01 5ptp b.47.1.2 26009 1j5pA 253 2.11e+01 c.2.1.3 83092 d.81.1.3 71577 1iofA 208 2.20e+01 1a2zA c.56.4.1 62625 1ootA 60 2.21e+01 b.34.2.1 -3576 1vjrA 271 2.24e+01 unknown_sccs -6853 1a5y 330 2.30e+01 1pty c.45.1.2 32673 1qdbA 473 2.34e+01 1qdbA a.138.1.3 19688 1jl0A 334 2.49e+01 1jenA d.156.1.1 63155 1eh9A 558 2.50e+01 1ehaA b.1.18.2 21858 b.71.1.1 27785 c.1.8.1 28772 1g3kA 174 2.61e+01 1nedA d.153.1.4 41989 1ihkA 174 2.61e+01 1bfg b.42.1.1 62384 1i2rA 316 2.64e+01 1onrA c.1.10.1 61580 1kw4A 89 2.69e+01 a.60.1.2 73077 1ioiA 208 2.69e+01 1a2zA c.56.4.1 62629 1d7qA 143 2.77e+01 1d7qA b.40.4.5 25331 1j8aA 223 2.78e+01 b.47.1.2 62737 4dpvZ 584 2.84e+01 2cas b.121.5.2 23377 1g3dA 228 2.85e+01 5ptp b.47.1.2 25920 1bty 229 2.88e+01 5ptp b.47.1.2 25833 1i2pA 316 2.89e+01 1onrA c.1.10.1 61576 1d2sA 170 2.92e+01 1d2sA b.29.1.4 24221 1uch 230 2.94e+01 1uch d.3.1.6 37129 1i2nA 316 2.97e+01 1onrA c.1.10.1 61572 1r62A 160 2.98e+01 1onrA 316 3.00e+01 1onrA c.1.10.1 29169 1zzzA 237 3.01e+01 5ptp b.47.1.2 25892 1ucwA 317 3.02e+01 1onrA c.1.10.1 29171 1ehaA 558 3.03e+01 1ehaA b.1.18.2 21859 b.71.1.1 27786 c.1.8.1 28773 1ophB 243 3.04e+01 b.47.1.2 -4131 1utnA 243 3.05e+01 b.47.1.2 -4169 1p5wA 548 3.05e+01 b.121.5.2 -3018 1o6sB 105 3.10e+01 b.1.6.1 81096 1k76A 62 3.12e+01 b.34.2.1 84343 2cas 548 3.14e+01 2cas b.121.5.2 23376 1nt2B 258 3.20e+01 a.183.1.1 86150 1iedA 256 3.20e+01 1lay b.57.1.1 62321 1v5pA 126 3.20e+01 1ycsB 239 3.21e+01 1ycsB b.34.2.1 24553 d.211.1.1 19155 1iecA 256 3.21e+01 1lay b.57.1.1 62319 1cmvA 256 3.23e+01 1lay b.57.1.1 27015 1id4A 256 3.23e+01 1lay b.57.1.1 62291 1lay 256 3.24e+01 1lay b.57.1.1 27014 1semA 58 3.26e+01 1ckaA b.34.2.1 24544 1g82A 160 3.27e+01 1bfg b.42.1.1 60337 1hj9A 226 3.28e+01 b.47.1.2 65845 1rkuA 206 3.28e+01 unknown_sccs -6823 1nkkA 256 3.30e+01 b.57.1.1 80567 1njtA 256 3.32e+01 b.57.1.1 80555 1iegA 256 3.37e+01 1lay b.57.1.1 62326 2tldE 220 3.37e+01 5ptp b.47.1.2 25881 1s5lD 352 3.40e+01 1iefA 256 3.43e+01 1lay b.57.1.1 62324 1jqdA 292 3.47e+01 c.66.1.19 71787 1i2oA 316 3.54e+01 1onrA c.1.10.1 61574 1jbbA 153 3.66e+01 1u9aA d.20.1.1 62842 1jatA 155 3.72e+01 1u9aA d.20.1.1 62818 1i2qA 316 3.72e+01 1onrA c.1.10.1 61578 1elvA 333 3.73e+01 5ptp b.47.1.2 59454 g.18.1.1 59455 1kveB 77 3.74e+01 1kveB 1vhkA 268 3.87e+01 b.122.1.2 -5133 c.116.1.5 -6709 2semA 60 3.89e+01 1ckaA b.34.2.1 24546 1gvlA 223 4.00e+01 b.47.1.2 70611