# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g24A 211 7.37e-01 1g24A d.166.1.1 42270 1souA 194 8.97e-01 1n0uA 842 1.63e+00 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 1senA 164 1.92e+00 1bpyA 335 2.17e+00 1bpyA a.60.6.1 17980 a.60.12.1 75819 d.218.1.2 75820 1rlr 761 2.37e+00 1rlr a.98.1.1 18753 c.7.1.2 30679 1v8gA 329 3.07e+00 a.46.2.1 -953 c.27.1.1 -6644 1ofdA 1520 3.50e+00 b.80.4.1 86935 c.1.4.1 86936 d.153.1.1 86937 1g8lA 411 4.35e+00 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1nbaA 264 4.41e+00 1nbaA unknown_sccs 31753 1te5A 257 4.65e+00 1tvlA 454 5.39e+00 1uox 296 5.88e+00 1uox 1o9gA 250 6.32e+00 c.66.1.29 86692 1r13A 148 6.49e+00 d.169.1.1 -11646 h.1.1.1 -12895 1fviA 297 6.69e+00 1fviA b.40.4.6 25364 d.142.2.1 41578 1mpuA 138 8.37e+00 d.169.1.1 85040 1k4nA 192 8.40e+00 d.32.1.5 72059 1q7sA 117 9.11e+00 unknown_sccs -7522 1hnnA 282 9.72e+00 c.66.1.15 65895 1ryp1 222 9.90e+00 1ryp1 1hfc 169 1.00e+01 1hfc d.92.1.11 40335 1r89A 437 1.06e+01 unknown_sccs -1147 unknown_sccs -9801 unknown_sccs -10061 1umgA 362 1.11e+01 1r4uA 301 1.16e+01 d.96.1.4 -10709 d.96.1.4 -10710 1j98A 157 1.16e+01 1j98A d.185.1.2 62755 1uqrA 154 1.20e+01 c.23.13.1 -6455 1o7kA 131 1.22e+01 d.189.1.1 81144 1khdA 345 1.23e+01 a.46.2.1 77400 c.27.1.1 77401 1ki1B 352 1.28e+01 a.87.1.1 72497 b.55.1.1 72498 1mg7A 417 1.37e+01 d.14.1.6 84954 d.58.26.6 84955 1bif 469 1.41e+01 1bif c.37.1.7 31961 c.60.1.4 34003 1v6fA 151 1.42e+01 1g2qA 187 1.44e+01 c.61.1.1 65117 1i5gA 144 1.44e+01 1ewxA c.47.1.10 61784 1jqeA 292 1.46e+01 c.66.1.19 71789 1kq6A 141 1.50e+01 d.189.1.1 -9926 1sbxA 106 1.54e+01 1rlkA 117 1.56e+01 unknown_sccs -7526 1kshA 186 1.58e+01 c.37.1.8 72914 1i9zA 347 1.99e+01 1i9yA d.151.1.2 62102 1hq8A 123 2.06e+01 1b6e d.169.1.1 61127 1gesA 450 2.23e+01 3grs c.3.1.5 30473 c.3.1.5 30474 d.87.1.1 40168 1g1tA 157 2.28e+01 d.169.1.1 65104 g.3.11.1 65105 1hg4A 279 2.29e+01 1lbd a.123.1.1 19333 1pwbA 177 2.41e+01 d.169.1.1 -11641 h.1.1.1 -12890 1h6qA 168 2.41e+01 1h6qA b.88.1.2 60692 1ko7A 314 2.54e+01 c.98.2.1 72797 c.91.1.2 72798 1ql0A 241 2.60e+01 1qaeA d.4.1.2 37139 1uj2A 252 2.65e+01 c.37.1.6 -7061 1jj2B 337 2.69e+01 1ffkB b.43.3.2 63086 1n4kA 381 2.70e+01 unknown_sccs 79992 b.42.6.1 79993 1s72B 338 2.77e+01 1nf8A 207 2.77e+01 unknown_sccs 85630 1oltA 457 2.79e+01 unknown_sccs -5688 1np3A 338 2.80e+01 a.100.1.2 85946 c.2.1.6 85947 1kekA 1231 2.81e+01 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1o8xA 146 2.82e+01 c.47.1.10 86681 1vg8A 207 2.88e+01 1sbp 310 2.95e+01 1sbp c.94.1.1 35760 1bsmA 201 2.96e+01 1avmA a.2.11.1 15780 d.44.1.1 38743 1jw9B 249 3.01e+01 c.111.1.1 67377 1a7j 290 3.14e+01 1a7j c.37.1.6 31952 1rvaA 244 3.17e+01 1rvaA c.52.1.2 33240 1sdoA 203 3.20e+01 unknown_sccs -7558 1eljA 381 3.31e+01 4mbp c.94.1.1 35791 1ev7A 317 3.35e+01 1ev7B c.52.1.9 33315 2occH 85 3.37e+01 2occH a.51.1.1 17796 1l7aA 318 3.38e+01 c.69.1.25 77772 1vhvA 268 3.46e+01 c.90.1.1 -8619 1eexA 554 3.52e+01 1dioA c.1.19.3 29650 2gwxA 267 3.53e+01 2prgA a.123.1.1 19323 1r8sA 164 3.59e+01 c.37.1.8 -7082 2ezk 99 3.61e+01 2ezk a.4.1.2 16027 1avmA 201 3.75e+01 1avmA a.2.11.1 15782 d.44.1.1 38745 1qamA 244 3.85e+01 2ercA c.66.1.24 34220