# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q8bA 105 3.39e-01 unknown_sccs -9958 1hfc 169 8.98e-01 1hfc d.92.1.11 40335 1s2xA 206 1.21e+00 1qhfA 240 1.40e+00 1qhfA c.60.1.1 33960 1kshA 186 1.47e+00 c.37.1.8 72914 1b0pA 1231 2.15e+00 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1j98A 157 3.09e+00 1j98A d.185.1.2 62755 1kekA 1231 3.15e+00 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1sbp 310 3.83e+00 1sbp c.94.1.1 35760 1tk9A 188 4.05e+00 1bb9 115 4.33e+00 1bb9 b.34.2.1 24554 1g24A 211 5.19e+00 1g24A d.166.1.1 42270 1jnrA 643 6.96e+00 a.7.3.1 66966 c.3.1.4 66967 d.168.1.1 66968 1k4nA 192 6.99e+00 d.32.1.5 72059 1jmsA 381 7.01e+00 a.60.6.1 66889 a.60.12.1 75862 d.218.1.2 75863 1jj2C 246 7.14e+00 1ffkC c.22.1.1 63087 1qamA 244 7.60e+00 2ercA c.66.1.24 34220 1rvaA 244 8.39e+00 1rvaA c.52.1.2 33240 1vypX 364 8.53e+00 1gvoA 364 9.11e+00 c.1.4.1 76357 1vyrA 364 9.13e+00 1h61A 364 9.16e+00 1oyc c.1.4.1 60657 1um0A 365 9.58e+00 1fjgK 129 9.88e+00 1fjfK c.55.4.1 33733 1sx5A 244 9.99e+00 c.52.1.2 -7551 1eonA 245 1.08e+01 1rvaA c.52.1.2 33238 1s72C 246 1.09e+01 1rkuA 206 1.19e+01 unknown_sccs -6823 1souA 194 1.25e+01 1ii7A 333 1.45e+01 1ii7A d.159.1.4 62415 1gowA 489 1.48e+01 1qvbA c.1.8.4 28981 1dbqA 289 1.53e+01 1qpzA c.93.1.1 35666 1kay 381 1.54e+01 1ba1 c.55.1.1 33385 c.55.1.1 33386 1msk 331 1.60e+01 1msk d.173.1.1 42495 1j57A 143 1.71e+01 d.221.1.1 77079 1uj2A 252 1.76e+01 c.37.1.6 -7061 1h6dA 433 1.76e+01 c.2.1.3 65656 d.81.1.5 65657 1jhfA 202 1.77e+01 a.4.5.2 63057 b.87.1.1 63058 1jk3A 158 1.81e+01 d.92.1.11 66790 1t3uA 104 1.89e+01 unknown_sccs -9325 1ej1A 190 1.91e+01 1ejhA d.86.1.1 40144 1amuA 563 1.91e+01 1amuA e.23.1.1 43351 1i5gA 144 1.95e+01 1ewxA c.47.1.10 61784 1mg7A 417 1.97e+01 d.14.1.6 84954 d.58.26.6 84955 1iq8A 582 1.99e+01 b.122.1.1 83074 c.1.20.1 71270 d.17.6.1 83075 1hfs 160 2.01e+01 1hfc d.92.1.11 40370 2olbA 517 2.02e+01 1jevA c.94.1.1 35721 1bupA 386 2.20e+01 1ba1 c.55.1.1 33377 c.55.1.1 33378 1otjA 283 2.21e+01 b.82.2.5 -4893 1n4kA 381 2.23e+01 unknown_sccs 79992 b.42.6.1 79993 1ofgA 381 2.24e+01 1ofgA c.2.1.3 30064 d.81.1.5 39979 1lt8A 406 2.31e+01 c.1.26.1 78186 1v8gA 329 2.39e+01 a.46.2.1 -953 c.27.1.1 -6644 1vk3A 615 2.40e+01 d.79.4.1 -10416 d.79.4.1 -10417 d.139.1.1 -11154 d.139.1.1 -11155 1shdA 107 2.47e+01 1fmk d.93.1.1 40440 1kveB 77 2.52e+01 1kveB 1g7sA 594 2.62e+01 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1uwsA 489 2.62e+01 1nnwA 252 2.63e+01 d.159.1.5 80674 1mv3A 213 2.65e+01 b.34.2.1 -3555 1k8kD 300 2.65e+01 d.198.2.1 68309 d.198.2.1 68310 1mg4A 113 2.68e+01 d.15.11.1 84953 1gx1A 160 2.71e+01 d.79.5.1 70675 1nykA 165 2.81e+01 b.33.1.1 86408 1mi3A 322 2.81e+01 c.1.7.1 -5257 1psdA 409 2.86e+01 1psdA c.2.1.4 30097 c.23.12.1 31357 d.58.18.1 39354 1hy7A 173 2.87e+01 d.92.1.11 65957 1bkjA 240 3.06e+01 1bkjA d.90.1.1 40243 1v6fA 151 3.10e+01 1elvA 333 3.11e+01 5ptp b.47.1.2 59454 g.18.1.1 59455 1d2eA 397 3.15e+01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1h2eA 207 3.17e+01 c.60.1.1 70857 1xwl 580 3.18e+01 1xwl c.55.3.5 33708 e.8.1.1 43001 1f5vA 240 3.19e+01 1bkjA d.90.1.1 40255 1ecfA 504 3.26e+01 1ecfB c.61.1.1 34053 d.153.1.1 41820 1nk4A 580 3.38e+01 c.55.3.5 -7625 e.8.1.1 -11875 1senA 164 3.40e+01 1hnnA 282 3.53e+01 c.66.1.15 65895 4fgf 146 3.58e+01 1bfg b.42.1.1 25486 1htjF 210 3.64e+01 1htjF a.91.1.1 61254 1sdoA 203 3.91e+01 unknown_sccs -7558 1l3sA 580 3.93e+01 c.55.3.5 84521 e.8.1.1 84522 1moq 368 3.99e+01 1moq c.80.1.1 35302