# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1souA 194 1.36e+00 1ahxA 396 1.58e+00 1ajsA c.67.1.1 34293 1p0yA 444 2.18e+00 a.166.1.1 87654 b.85.7.3 87655 1qisA 396 2.73e+00 1ajsA c.67.1.1 34284 1ars 396 2.76e+00 1ajsA c.67.1.1 34287 1hi9A 274 3.33e+00 1hi9A c.99.1.1 61063 1gw5S 142 3.34e+00 d.110.4.2 70633 1ut8A 291 3.80e+00 a.60.7.1 -1036 c.120.1.2 -6675 1rwhA 757 3.86e+00 a.102.3.2 -1340 b.24.1.1 -3300 b.30.5.2 -3508 4dpvZ 584 4.31e+00 2cas b.121.5.2 23377 1hl2A 297 6.06e+00 c.1.10.1 83581 1upkA 341 6.14e+00 unknown_sccs -1565 1kgnA 329 6.34e+00 a.25.1.2 68584 1g73A 162 6.47e+00 1fewA a.7.4.1 16332 1p0kA 349 7.44e+00 c.1.4.1 87648 1o4rA 108 7.61e+00 d.93.1.1 -10624 1izcA 339 8.12e+00 c.1.12.5 83838 1t3uA 104 8.26e+00 unknown_sccs -9325 1cb0A 283 8.48e+00 1cb0A c.56.2.1 33790 1v64A 108 8.67e+00 1q8bA 105 9.10e+00 unknown_sccs -9958 1h10A 125 9.44e+00 b.55.1.1 83446 1vypX 364 9.87e+00 1ug6A 431 1.01e+01 c.1.8.4 88490 1sbp 310 1.01e+01 1sbp c.94.1.1 35760 1gvoA 364 1.02e+01 c.1.4.1 76357 1bpyA 335 1.04e+01 1bpyA a.60.6.1 17980 a.60.12.1 75819 d.218.1.2 75820 1qrrA 394 1.04e+01 1qrrA c.2.1.2 29824 1vyrA 364 1.06e+01 1fukA 165 1.07e+01 1fukA c.37.1.19 32409 1go3F 107 1.08e+01 a.60.8.2 65407 1h61A 364 1.10e+01 1oyc c.1.4.1 60657 1h6qA 168 1.11e+01 1h6qA b.88.1.2 60692 1shdA 107 1.15e+01 1fmk d.93.1.1 40440 1nrjB 218 1.22e+01 c.37.1.8 86125 1nal1 297 1.26e+01 1nal3 1sedA 117 1.32e+01 1k4nA 192 1.34e+01 d.32.1.5 72059 1i24A 404 1.34e+01 c.2.1.2 83663 1uu1A 335 1.38e+01 c.67.1.1 -8146 1dbqA 289 1.41e+01 1qpzA c.93.1.1 35666 1he1A 135 1.41e+01 1he1A a.24.11.1 16641 1qwgA 251 1.44e+01 unknown_sccs -5678 1vh6A 145 1.45e+01 unknown_sccs -617 1od6A 160 1.50e+01 c.26.1.3 86836 1jh6A 189 1.51e+01 d.61.1.1 66707 1euhA 475 1.55e+01 1euhA c.82.1.1 35369 1ez0A 510 1.65e+01 1eyyA c.82.1.1 35385 1m55A 197 1.69e+01 d.89.1.3 74469 1i5gA 144 1.78e+01 1ewxA c.47.1.10 61784 1knyA 253 1.87e+01 1knyA a.24.16.1 75896 d.218.1.1 75897 1hb6A 86 1.89e+01 a.11.1.1 70959 4crxA 322 1.95e+01 4crxA a.60.9.1 18095 d.163.1.1 42155 1k20A 310 2.00e+01 c.107.1.1 68027 1dbhA 354 2.02e+01 1awe a.87.1.1 18514 b.55.1.1 26967 1ur1A 378 2.07e+01 c.1.8.3 -5311 1dcoA 104 2.10e+01 1dcpA d.74.1.1 39680 1dekA 241 2.17e+01 1dekA c.37.1.1 31842 1fsiA 189 2.19e+01 1fsiA d.61.1.1 39536 1brfA 53 2.20e+01 1rb9 g.41.5.1 45236 1shbA 104 2.36e+01 1fmk d.93.1.1 40425 1q0sA 259 2.42e+01 c.66.1.28 -8110 1n82A 331 2.42e+01 c.1.8.3 -5306 1nykA 165 2.50e+01 b.33.1.1 86408 1a0jA 223 2.53e+01 5ptp b.47.1.2 26002 1c3pA 375 2.55e+01 1c3pA c.42.1.2 32606 1b16A 254 2.55e+01 1b16A c.2.1.2 29875 1senA 164 2.62e+01 1b04A 318 2.64e+01 1b04A d.142.2.2 41579 1bq9A 54 2.71e+01 1rb9 g.41.5.1 45238 1ibrB 462 2.82e+01 1qgrA a.118.1.1 19120 1rhcA 330 2.90e+01 c.1.16.3 -5606 1g5tA 196 2.99e+01 1g5rA c.37.1.11 32366 1ct5A 256 3.01e+01 1ct5A c.1.6.2 28663 1nzjA 298 3.05e+01 c.26.1.1 -6600 1ei5A 520 3.07e+01 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1a6m 151 3.11e+01 1a6m a.1.1.2 15018 1mzhA 225 3.17e+01 c.1.10.1 79698 1uz5A 402 3.24e+01 b.85.6.1 -5029 b.103.1.1 -5069 c.57.1.2 -7902 1htjF 210 3.32e+01 1htjF a.91.1.1 61254 1gqeA 365 3.33e+01 e.38.1.1 70351 1gvnA 90 3.35e+01 a.8.2.1 76353 1dxy 333 3.41e+01 1dxy c.2.1.4 30094 c.23.12.1 31354 1fkmA 396 3.42e+01 1fkmA a.69.2.1 18315 a.69.2.1 18316 1bupA 386 3.43e+01 1ba1 c.55.1.1 33377 c.55.1.1 33378 1d2eA 397 3.53e+01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1oxxK 353 3.54e+01 b.40.6.3 -3969 c.37.1.12 -7187 1p1lA 102 3.58e+01 d.58.5.2 87695 1orjA 130 3.58e+01 unknown_sccs -611 1kshA 186 3.62e+01 c.37.1.8 72914 1kay 381 3.78e+01 1ba1 c.55.1.1 33385 c.55.1.1 33386 1v8gA 329 3.90e+01 a.46.2.1 -953 c.27.1.1 -6644