# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q8bA 105 3.40e-02 unknown_sccs -9958 1tk9A 188 6.16e-01 1ftrA 296 8.17e-01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1fjgK 129 9.33e-01 1fjfK c.55.4.1 33733 1qhfA 240 1.80e+00 1qhfA c.60.1.1 33960 1hfc 169 1.87e+00 1hfc d.92.1.11 40335 1s2xA 206 2.23e+00 1fuiA 591 2.35e+00 1fuiA b.43.2.1 25674 c.85.1.1 35444 1ii7A 333 2.42e+00 1ii7A d.159.1.4 62415 1bb9 115 2.42e+00 1bb9 b.34.2.1 24554 1senA 164 2.72e+00 1gvoA 364 2.95e+00 c.1.4.1 76357 1h61A 364 2.97e+00 1oyc c.1.4.1 60657 1vyrA 364 2.97e+00 1vypX 364 3.05e+00 1rvaA 244 3.12e+00 1rvaA c.52.1.2 33240 1mi3A 322 3.59e+00 c.1.7.1 -5257 1nffA 260 3.75e+00 c.2.1.2 80457 1sx5A 244 3.89e+00 c.52.1.2 -7551 1qamA 244 4.42e+00 2ercA c.66.1.24 34220 1k4nA 192 4.47e+00 d.32.1.5 72059 1f2tB 148 4.62e+00 1f2tB 1nf8A 207 4.79e+00 unknown_sccs 85630 1eonA 245 5.06e+00 1rvaA c.52.1.2 33238 1nnwA 252 5.53e+00 d.159.1.5 80674 1j57A 143 5.69e+00 d.221.1.1 77079 1nmeA 146 6.55e+00 c.17.1.1 85874 1moq 368 6.64e+00 1moq c.80.1.1 35302 1d2eA 397 6.85e+00 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1hi9A 274 7.11e+00 1hi9A c.99.1.1 61063 1vi6A 208 7.41e+00 c.23.15.1 -6489 1uuqA 440 8.04e+00 c.1.8.3 -5321 1kshA 186 8.70e+00 c.37.1.8 72914 1ycsB 239 9.03e+00 1ycsB b.34.2.1 24553 d.211.1.1 19155 1n82A 331 9.19e+00 c.1.8.3 -5306 1sbp 310 9.37e+00 1sbp c.94.1.1 35760 1nf9A 207 1.02e+01 unknown_sccs 85631 1ej1A 190 1.02e+01 1ejhA d.86.1.1 40144 1ooeA 236 1.10e+01 c.2.1.2 87196 1cqmA 101 1.16e+01 1ris d.58.14.1 39321 1g24A 211 1.18e+01 1g24A d.166.1.1 42270 1jnrA 643 1.20e+01 a.7.3.1 66966 c.3.1.4 66967 d.168.1.1 66968 1um0A 365 1.22e+01 1pf5A 131 1.22e+01 d.79.1.1 -10368 1dbqA 289 1.24e+01 1qpzA c.93.1.1 35666 1uwsA 489 1.25e+01 1hjzA 192 1.33e+01 c.50.1.2 83520 1amuA 563 1.34e+01 1amuA e.23.1.1 43351 1b0pA 1231 1.46e+01 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1ohvA 472 1.49e+01 c.67.1.4 -8181 1gx4A 289 1.54e+01 c.68.1.9 83362 1kveB 77 1.56e+01 1kveB 1vhuA 211 1.57e+01 c.50.1.2 -7934 1o7qA 289 1.58e+01 c.68.1.9 -8216 1oyc 400 1.59e+01 1oyc c.1.4.1 28603 1s6yA 450 1.64e+01 1ur3M 319 1.65e+01 c.1.7.1 -5248 1msk 331 1.67e+01 1msk d.173.1.1 42495 1ka9H 200 1.73e+01 c.23.16.1 77308 2olbA 517 1.79e+01 1jevA c.94.1.1 35721 1lt8A 406 1.83e+01 c.1.26.1 78186 1jz8A 1023 1.85e+01 b.1.4.1 67830 b.1.4.1 67831 b.18.1.5 67832 b.30.5.1 67833 c.1.8.3 67834 1dp0A 1023 1.85e+01 b.1.4.1 22073 b.1.4.1 22074 b.18.1.5 23722 b.30.5.1 24346 c.1.8.3 28845 1l8nA 679 1.91e+01 c.1.8.10 84564 d.92.2.2 84565 1f75A 249 1.95e+01 1f75A c.101.1.1 59662 1nbaA 264 1.96e+01 1nbaA unknown_sccs 31753 1jk3A 158 1.97e+01 d.92.1.11 66790 1kao 167 1.99e+01 1ctqA c.37.1.8 32014 1mp9A 198 2.16e+01 a.74.1.2 -1127 a.74.1.2 -1128 1qsmA 152 2.18e+01 1qsmA d.108.1.1 40808 1i5gA 144 2.33e+01 1ewxA c.47.1.10 61784 1bdb 277 2.46e+01 1bdb c.2.1.2 29874 1pyoA 167 2.46e+01 c.17.1.1 -7932 1i9gA 280 2.58e+01 c.66.1.13 62090 1bif 469 2.66e+01 1bif c.37.1.7 31961 c.60.1.4 34003 1frb 315 2.77e+01 1frb c.1.7.1 28665 1bbhA 131 2.80e+01 1bbhA a.24.3.2 16546 1h2eA 207 2.81e+01 c.60.1.1 70857 1rkuA 206 2.82e+01 unknown_sccs -6823 1g7sA 594 2.85e+01 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1t46A 313 2.95e+01 1vk3A 615 3.07e+01 d.79.4.1 -10416 d.79.4.1 -10417 d.139.1.1 -11154 d.139.1.1 -11155 1psdA 409 3.10e+01 1psdA c.2.1.4 30097 c.23.12.1 31357 d.58.18.1 39354 1jmsA 381 3.12e+01 a.60.6.1 66889 a.60.12.1 75862 d.218.1.2 75863 1atlA 202 3.26e+01 1atlA d.92.1.9 40322 1mg4A 113 3.36e+01 d.15.11.1 84953 1hufA 140 3.42e+01 1hufA d.195.1.1 61272 1t7pA 698 3.43e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1mv3A 213 3.48e+01 b.34.2.1 -3555 1fx2A 235 3.50e+01 1fx2A d.58.29.1 39430 1sdoA 203 3.64e+01 unknown_sccs -7558 1c3pA 375 3.68e+01 1c3pA c.42.1.2 32606 1fnuA 221 3.69e+01 3seb b.40.2.2 25212 d.15.6.1 37801 1xwl 580 3.76e+01 1xwl c.55.3.5 33708 e.8.1.1 43001 1kfwA 435 3.77e+01 c.1.8.5 77376 d.26.3.1 77377 1kekA 1231 3.81e+01 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1j5xA 342 3.89e+01 c.80.1.1 71591 1iq8A 582 3.89e+01 b.122.1.1 83074 c.1.20.1 71270 d.17.6.1 83075 1gowA 489 3.95e+01 1qvbA c.1.8.4 28981 1jj2L 194 3.96e+01 1ffkI d.12.1.2 63097