# List of top-scoring protein chains for t04-100-30-bys hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rkuA 206 6.25e-01 unknown_sccs -6823 1frpA 335 1.35e+00 1frpA e.7.1.1 42875 1ut8A 291 1.65e+00 a.60.7.1 -1036 c.120.1.2 -6675 1s2xA 206 2.08e+00 1kveB 77 2.14e+00 1kveB 1wpoA 256 2.83e+00 1lay b.57.1.1 27012 1fuiA 591 3.26e+00 1fuiA b.43.2.1 25674 c.85.1.1 35444 1nnwA 252 3.57e+00 d.159.1.5 80674 1nffA 260 3.87e+00 c.2.1.2 80457 1nrjB 218 4.44e+00 c.37.1.8 86125 1hi9A 274 4.44e+00 1hi9A c.99.1.1 61063 1htjF 210 5.04e+00 1htjF a.91.1.1 61254 1um0A 365 5.19e+00 1q8bA 105 5.19e+00 unknown_sccs -9958 1oqcA 125 5.80e+00 a.24.15.1 87264 1rvaA 244 5.97e+00 1rvaA c.52.1.2 33240 1eonA 245 6.33e+00 1rvaA c.52.1.2 33238 1qsmA 152 6.47e+00 1qsmA d.108.1.1 40808 1sx5A 244 6.70e+00 c.52.1.2 -7551 1lqtA 456 7.06e+00 c.3.1.1 74198 c.4.1.1 74199 1nzoA 363 7.18e+00 b.105.1.1 -2933 e.3.1.1 -11784 1nykA 165 7.26e+00 b.33.1.1 86408 1vypX 364 8.39e+00 1vyrA 364 8.43e+00 1tk9A 188 8.47e+00 1azsA 220 8.49e+00 1azsA d.58.29.1 39416 1so2A 420 8.64e+00 a.125.1.1 -1735 1hfc 169 9.02e+00 1hfc d.92.1.11 40335 1cnt1 187 9.29e+00 1cnt3 1kmqA 184 9.52e+00 c.37.1.8 84412 1kekA 1231 9.57e+00 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1louA 101 9.72e+00 1ris d.58.14.1 39323 1b0pA 1231 1.00e+01 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1r5lA 262 1.04e+01 a.5.3.1 -360 c.13.1.1 -6215 1h61A 364 1.06e+01 1oyc c.1.4.1 60657 1d2eA 397 1.11e+01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1go3F 107 1.14e+01 a.60.8.2 65407 1nj4A 363 1.27e+01 b.105.1.1 80545 e.3.1.1 80546 1p1lA 102 1.34e+01 d.58.5.2 87695 1n82A 331 1.36e+01 c.1.8.3 -5306 1gp6A 356 1.37e+01 b.82.2.1 65441 1gw5S 142 1.39e+01 d.110.4.2 70633 1m2dA 110 1.42e+01 c.47.1.11 78476 1v64A 108 1.43e+01 1ei6A 406 1.53e+01 unknown_sccs -8436 1rthA 560 1.56e+01 1rthA c.55.3.1 33576 e.8.1.2 43028 1f75A 249 1.59e+01 1f75A c.101.1.1 59662 1gvoA 364 1.61e+01 c.1.4.1 76357 1j57A 143 1.62e+01 d.221.1.1 77079 1qycA 308 1.66e+01 c.2.1.2 -5782 1kao 167 1.71e+01 1ctqA c.37.1.8 32014 1s72C 246 1.72e+01 1jj2C 246 1.72e+01 1ffkC c.22.1.1 63087 1yacA 208 1.77e+01 1yacA unknown_sccs 31757 1tx4B 178 1.84e+01 1ctqA c.37.1.8 32045 1t3uA 104 1.88e+01 unknown_sccs -9325 1r6uA 437 1.92e+01 c.26.1.1 -6594 1uzbA 516 1.99e+01 c.82.1.1 -8552 1rypI 222 2.01e+01 d.153.1.4 41877 1twdA 256 2.05e+01 1nf8A 207 2.07e+01 unknown_sccs 85630 1qrrA 394 2.11e+01 1qrrA c.2.1.2 29824 1sbp 310 2.13e+01 1sbp c.94.1.1 35760 1qsoA 149 2.15e+01 1qsmA d.108.1.1 40812 1xo1A 291 2.16e+01 1exnA a.60.7.1 18086 c.120.1.2 33356 1i5gA 144 2.16e+01 1ewxA c.47.1.10 61784 1qnxA 209 2.16e+01 1qnxA d.111.1.1 40914 1fukA 165 2.20e+01 1fukA c.37.1.19 32409 1gx4A 289 2.22e+01 c.68.1.9 83362 1qhfA 240 2.24e+01 1qhfA c.60.1.1 33960 1i24A 404 2.28e+01 c.2.1.2 83663 1hjxA 362 2.32e+01 c.1.8.5 83512 d.26.3.1 83513 1ii7A 333 2.40e+01 1ii7A d.159.1.4 62415 1db3A 372 2.55e+01 1db3A c.2.1.2 29813 1ka9H 200 2.55e+01 c.23.16.1 77308 1e6pA 499 2.59e+01 1e15A b.72.2.1 59314 c.1.8.5 59315 d.26.3.1 59316 1pujA 282 2.61e+01 c.37.1.8 88294 1fsiA 189 2.73e+01 1fsiA d.61.1.1 39536 1t7pA 698 2.78e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1s7hA 200 2.84e+01 1moq 368 2.89e+01 1moq c.80.1.1 35302 1edqA 540 2.90e+01 1ctn b.1.18.2 21873 c.1.8.5 29002 d.26.3.1 38436 1elvA 333 2.91e+01 5ptp b.47.1.2 59454 g.18.1.1 59455 1j97A 211 2.91e+01 1f5sA c.108.1.4 62753 1gyzA 60 2.92e+01 a.144.2.1 70793 1p97A 114 2.94e+01 unknown_sccs -10844 1thtA 305 2.96e+01 1thtA c.69.1.13 34711 1nf9A 207 2.98e+01 unknown_sccs 85631 1e17A 150 3.04e+01 2hfh a.4.5.14 16143 1a8s 273 3.05e+01 1brt c.69.1.12 34710 1nuyA 337 3.05e+01 e.7.1.1 86213 1l7mA 211 3.20e+01 c.108.1.4 73664 1f7lA 121 3.24e+01 1f7lA d.150.1.2 59666 1ftrA 296 3.35e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 2ezk 99 3.38e+01 2ezk a.4.1.2 16027 1ji1A 637 3.58e+01 b.1.18.2 71666 b.71.1.1 71667 c.1.8.1 71668 1f42A 306 3.68e+01 1f42A b.1.1.4 59636 b.1.2.1 59637 b.1.2.1 59638 2ts1 419 3.74e+01 2ts1 c.26.1.1 31564 1hb6A 86 3.83e+01 a.11.1.1 70959 1js8A 394 3.86e+01 a.86.1.1 67219 b.112.1.1 67220 1i9gA 280 3.88e+01 c.66.1.13 62090 1th8A 145 3.88e+01 1lsuA 147 3.89e+01 c.2.1.9 74250 1atlA 202 3.91e+01 1atlA d.92.1.9 40322 1cztA 160 3.97e+01 1cztA b.18.1.2 23715 1sig 339 3.97e+01 1sig a.177.1.1 19068