CreatePredAlphaCost pred_alpha2k alpha11 T0269.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0269.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 15 near_backbone 3 way_back 3 dry5 15 dry6.5 25 dry8 15 dry12 5 \
	phobic_fit 2 \
	sidechain 2 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 40  \
	pred_alpha2k 3 \
	pred_alpha04 6 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 15

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

# from T0269.t04.dssp-ehl2.constraints
HelixConstraint 	T51	R66	0.6317
HelixConstraint 	H82	H92	0.6485
HelixConstraint 	T108	R112	0.6328
HelixConstraint 	V151	K162	0.7061

StrandConstraint	M15	T18	0.7377
StrandConstraint	I24	K25	0.6237
StrandConstraint	W36	S41	0.6079
StrandConstraint	D70	S75	0.7254
StrandConstraint	I101	A103	0.694
StrandConstraint	G127	V131	0.7914
StrandConstraint	I137	Y142	0.7209

# from decoys/try2-opt2.sheets
SheetConstraint E14 T19   	P27 G22   	hbond V17	5.0
SheetConstraint K35 H42   	G68 S75   	hbond W36	5.0
SheetConstraint W36 S41   	D132 G127   	hbond F37	5.0
SheetConstraint G73 L74   	I101 I102   	hbond G73	5.0
SheetConstraint G127 I130   	Y142 T139   	hbond V128	5.0

# from 165-end/decoys/try3-opt2.helices
HelixConstraint T192	Y205	2.0
HelixConstraint S219	A234	2.0
HelixConstraint P237	H250	2.0

SheetConstraint R138 L141 	C213 W210	Hbond M140	3.0